RNA id: XM_022684320.1


Basic Information

Item Value
RNA id XM_022684320.1
length 4875
RNA type mRNA
GC content 0.50
exon number 15
gene id LOC103033398
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 8768529 ~ 8788703 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGTCAGGGACAGGGAGCGTATTCTGGGGGACAGGAAGTCGAATCGCTCGGACGATGGCAGCCAGCAGCAGTTTCCAGTGAAGGAGACGGTGGAGGTGATCAGAGACGCTGTGCTGGACTCCCACGGCTTCACCCTCACCACACAGCTCCCTCTGCTGGTCAGGGATGTCACTCCAGGAGGACCAGCAGATGGTCGTCTTTTACCTGGTGACCAAGTGCTAAAAGTCAACAATAAAGCCATAGAGGACCTGTCTCCGGAAAATGTGGAGCACATGATCAGGGACTGCCAGGACTCTGTTACCATGACGGTCCTCAGAAACATGCTGAACCCCAAGTCCTCATTCATGAGTGCGGAGAAGAGAGCTCGCCTGAGAAGAAATCCAGTTAAAGTGCGCTTTGCAGAGGAGGTGGTCGTTAACGGACACACTCAGGGAAACTCTCTTCTCTTCCTGCCCAATGTGCTGAAGGTCTACCTGGAAAACGGACAGACCAAAGCCTTCAAATTTGATAAAACCACCTCTGTCAAGGACATAGTGCTGACTCTGAAGGAGAAGCTGTCGATTCGCTCGATTGAGCATTTCTctctggtgctggagcagcaatacAGCATCACCAAGCTCCTGTTACTGCACGAAGACGAGCTCATACAGAAGGTGGTGCAGAAGAAGGACTCTCATGATTACAGGTGTTTGTTCAGAGTGTGTTTCATCCCTCGAGACCCTGTGGATCTGCTGCACGATGACCCAGTAGCCTTTGAATACCTCTTCCACCAGAGTGTAGGGGACGTGTTGCAGGAGCGGTTTGCAGTAGAGATGAAATGCAACACTGCTTTAAGGCTGGCAGCGCTGCACATGCATGAAAGAATGGCCAGCTGTGGACAAACCACAAGAGCATCTGTCAAGGGCATCATTAAGGAGTTTGGTATGGAGAGCTTTATTTCACCTACGTTACTGAGGaacatgagagagaaagacctGAGAAAAGCACTTACAGGACACATGAAgaagatccaatcactgctggAGCCTCGCCAGAAAGTTATCTCTGTACCTCAGGCCAGGTTGGCATATCTGACTCAGATGGCAGAGCTGATTTCATACAGTGGGAGATCCTACAACGCCACCATGCTGCTGCAGGACCGGGAGTCCTTGGTGAGTTTGCTGGTGGGAGCACGGTATGGCGTCAGTCAGATCCTAAACCACAAGCTCAACATGATTTCCACCATCATAGACTTCCATTACATCACCCGTGTAGAGGTGCTCTCTGAATCTGACAGAGTCAGCATGCTAAAGATCTATCTGCATGACATCCAGCCACTGGCCTTGCTAATGGATTCAGTTGCTGCTAAGGACTTAGCCTGTCTGCTGGCTGGCTACTGCAGACTGTTGGTGGATCCTAACATGAACGTGTTCCGTTGGGGCCCTCGCCCCAAAATGCGCCGAATACCTTTAGATGAAGGCTATGGATTCCGCTGTGGCAGTGACTCAGATTTGAGTTCAGATGAGGATTACTCCATGGACAACGTGCTGGACGCTCAACATTCGGAAGACACGGCGTCAACGCATACAAATGACGGAAAGGAAGATGAGAAGGTTCAAGAGAATAAACAGAAGGCCACGGTGGAGACGGTACGAGTGTTTGTGACTCATGCGGAAGAAGGAAATAAAGCAGCGGAAGGTGGTCTAGATGGGACGAGTATAAGTGGCTCGGTTGAAGATGAGGACTATGCAGCCCGGGTTAATGCACTTCTGGAGACAGGCTGGTATACTGACCCGAGGGTCAATAGCAGCTTCTCGAGTCTGTCGAGTAACTCCCTGAATGCTCTGGAAGAGAGTTGTCGGGCGTCCACTGCAGGAGCTACTCAATTGGACAATTTTAAGGAGGAGGCACTCACACCAGATCAGGCTGCTGGGACTAGCCTTGATGTCCATCATCCGTACTTATTAGAGGTGCCTGAACGCCACCGGAAAGAGGATTCGGACACCCCGGTACGACCCGGTGACTTCTCCTACAACCGGAACCCAGGCTTGCGCTACACACAGCTCTCGCAAATGGCTGACTACCTCCCCAGCCCACCTGAAGCCAGCGACGATGCACTTAgtgatgaggatgaggagggtGCAGATGAGAACGGCAATGATAGACTCATTTCAGACATGTCTGCAGATCTTGAGGCTGTGTTGGCATCAGGTGGTAGCAATAGTATAAAAGGTACAGTAGCAGGTGTAGATGTTCAAGCACTTTTAGCAAGGATCCGCAGCCATCCAGCATGTCAGCAAGAATGGAGAAACCCTGGTGTCCTCCACAGACAGGAAATGAAATCGAGGGGGGCAATGGCCAGAGGAAAacctccacctcctcccccGCCTCCAAGAACAGTGTCTGTGAAGATGTGTAAGGACTACCGAGACAGTGGTACAGAATCAGAAGATGAATTCTTCGATGCCCAGGATCGTCTTACTCCACCAATCCTAGAACGCCCTGCAGAGAAAGACACAAAAGTGAGTATCAAAGATCGTGCCCAGAACATGAATGAGGTCAAGACCACTGTACAAGAGACAGCAACACATGAAGTCAAACAACTAAAGGAGACTTTAATCATCAATAAAAACAATCTAAAATCACCATCCCTTCTTAATCATCTCACTCCTGAAGCAACTGTTCTTGATAAACAAGAGTTTGAGGTTCATCAGCCCTCACTTACCATTCTCCCTCAACGGACGCTGCTCGAATCTAAGCCCATTGTGGATAATCATGTCTCAGAACAGGGCCAGCAGTGCAATGGAGATATTCCTGGCCGCAGTTCTCACCTATCCTCTGAGCTTTTAGAAATGGAGCCAGACACTATGGAATTTAAGCCTGTTACTACAGCTGGACCACCACTATCTTCACCCTTAATCAGGGCAGTGCGACAAGCTCAACCTCAGCCACCATCCCCAGCAGATCCTGCACTTGTGAATGGTTCCAAGCAGCAAAACCAAATTTCCAATCATGCCCCAGTCAATTTTGAACATACCAGCCACGTGAACCTCAATGACAAAGCCCCTGATTCCCAAAATGTTACAAAACCAACAGAAACTCCTGTGGATACAAAAGTTGAAACGTTTAAAATAGAGAATACAGCAGAAAACCAAtccaagaaagaagaaaagtctGTGGTCAAACCTCCAGTTCCCCCAAAACCCAAATCTGTTCGTTGTCAACCATCATCAGCCTCAGATATTATTGCTCATCCTTTacaaactgaaagcaaacaacATATACCACCAAACGGACTTTCCTTGCACCCCTGGTCCCAGCGGAACGGGACCACTCCAGCCCCTATTCTCAGTAAGGGTGTCTCACTGAGCCATGAGAATCTTAGAAGTGAACTAAAAACTGAGAACACTACTGTCAAAGGGACAAGTGCATCAACTACTCCAACTCCCACGTCCACCCCAGCGTTATCCCCGGCTGCTTCTATCAGAGGGTCTGTTAGCATGGACCCCAAAGATCCTTTTGGGATCGGGATGAGTTTACCAAGCAGAACGTCTTCTGGGCGTCTATCTGCTTCAGCACTGAGAGGAAAGATCCAAGATATGCCTTGGTATCTTACAAGATCACAAGAAATTTTGGGTACTATTGCACTGAGCGGAGATAAATCAACAGACACGAAAGAATCAAAGGAAGAGCACATGGAATCTAAGAAGGAATCACCAAAGGCCACTTCAGTACCTTCTTTGAACGACTGGAAAGAGAAAGATGCTGAAGTTGTCGTTGTGAAACTAAAAGATGGGCCACAAGAGGTGAGTTCTCTTGTAAAAGAGTCCagtgagatctctttatctgGTCTTCCAGATGTGAGGCAAAATGGGTTGCGAGACTCCATTGAACTCCTGTCGCACTTGGGAACGTGCAAGCTGGAACAGCCCCAGTCTCAAAAGGTCATTGGTACGCAGGATAGCTTTGAAACGCCCATGCCGGAATCAAGTCCCAGCACACCGCATCGGGAAGCTTGTGGATGTCATACTGTTTATGCCAACTGCTTCAGCGGGGATGCTGAAGATGTCTGTGGCTTTGATGACGAACTGACAGTGTATGAGTTCTCCCGTCAGAAACGAATCAGCAAACCACCACAGACTGCATGTACAGCTCCGTCATCCATCTGTGCCCCTTCGCCAAACATCCTGTCACTGCTCAGGGACTCTCCTCGTCCCCTGTCAACCTCTTCAGAGCTCAGCCCCCTTCTTACCCCACCCCGATCACTTGAGTCTCGACCGAAGGGGCGCTCCCCCCTGGACGATCCACTTCGGGACCTTCAGGGCAGGCGGTACCTGACAGGCCCAAAAGGTACAGGGCTTAAAGGGGGCTACACCTCCCTCCACAAAGACATAGACGAGCTTTTGTTGGTGCTTAAGAATGGAGAGACCGCAATAAATCCTCCATGCCACAAAGGGCAGTGTGAAAAGGGCAAGAACGGACACTCCTTTCCAGAAACGGAGCGCTGCCTGGTGCAGGCCGAGGCACGGAGGCTGGCGTCAGGATGCCAGCGTGCAACACGTGTCGGTTGGGCACCAGATGACGCCCTGCTCTCTCTAGGCAACAGCTTTGGAGCTCTGGTGCATCTGTCAGCGGCTTGCCTACGAGTttcctgctcagactgtgggggGTGCCATGGGGATATTGACGGAGCTGAAGCTCTAAGGAAGCTTCAGGAGATTGTGTGTCTGTACAAGGAGTTTGTGACGGCTGTGGAAACGGCCCAAGAGGCGGAAGGTGTTAGGCTCTTGGCCAAACAGTGCACGGTTCTAATCTCCTCAGTGTTCTCGCTCACACAGCTCTTCAGAACACATACGCCAGACACGGACAGTAGACACATACCTCTGAACTTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU276877 lncRNA downstream 252154 8515842 ~ 8516375 (-) True G204078
TU276860 lncRNA downstream 340979 8425387 ~ 8427550 (-) True G204066
TU276863 lncRNA downstream 340979 8426841 ~ 8427550 (-) False G204066
TU276823 lncRNA downstream 557710 8210100 ~ 8210819 (-) True G204032
TU276820 lncRNA downstream 610758 8156629 ~ 8157771 (-) True G204029
TU277002 lncRNA upstream 6598 8795301 ~ 8825391 (-) True G204178
TU277045 lncRNA upstream 230203 9018906 ~ 9049811 (-) True G204217
TU277047 lncRNA upstream 271515 9060218 ~ 9067121 (-) True G204219
TU277050 lncRNA upstream 276906 9065609 ~ 9066693 (-) True G204221
TU277052 lncRNA upstream 316165 9104868 ~ 9105080 (-) True G204222
XM_022683542.1 mRNA downstream 21457 8737654 ~ 8747072 (-) True cenpu
XM_022683540.1 mRNA downstream 54210 8703958 ~ 8714319 (-) False LOC103025383
XM_007247471.2 mRNA downstream 54210 8703958 ~ 8714319 (-) True LOC103025383
XM_007247473.3 mRNA downstream 66248 8677122 ~ 8702281 (-) True irf2
XM_007247472.3 mRNA downstream 66748 8677122 ~ 8701781 (-) False irf2
XM_022683543.1 mRNA upstream 51760 8840463 ~ 8848178 (-) True guf1
XM_022683544.1 mRNA upstream 116820 8905523 ~ 8994456 (-) False LOC103033058
XM_022683545.1 mRNA upstream 116820 8905523 ~ 8994456 (-) True LOC103033058
XM_007247464.3 mRNA upstream 237923 9026626 ~ 9075395 (-) True gabra4
XM_007247456.3 mRNA upstream 803320 9592023 ~ 9603124 (-) True pcgf1
TU276738 other downstream 1119643 7624083 ~ 7648886 (-) False LOC107197584
TU276577 other downstream 2164051 6603676 ~ 6604478 (-) False jph3
trnai-uau_43 other downstream 2236000 6532437 ~ 6532529 (-) True trnai-uau_43
trnai-uau_42 other downstream 2236861 6531576 ~ 6531668 (-) True trnai-uau_42
trnai-uau_41 other downstream 2237850 6530587 ~ 6530679 (-) True trnai-uau_41
TU277526 other upstream 1855551 10644254 ~ 10644687 (-) True G204584
TU277652 other upstream 2794497 11583200 ~ 11584074 (-) True G204671
TU278618 other upstream 4945010 13733713 ~ 13739921 (-) True LOC111195729
TU278646 other upstream 4984614 13773317 ~ 13777621 (-) True G205375
TU278710 other upstream 5185974 13974677 ~ 13978450 (-) True LOC103035169

Expression Profile