guf1 (guf1)


Basic Information

Item Value
gene id guf1
gene name guf1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 8840463 ~ 8848178 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022683543.1
CCAGCTCTGGTTTCACCTCACTATGGCGGCTCCCTGTAACACATGAATATGTGAAATAGAAAACATTATCAAACCCGGGATGTTTTGGAAGGTTTTTCAGTCGGCTTCACTGAGAAAAAGGGAATTAGATGgttggttttaattttattttaatcaggcGTAATGGTAATGATACTGAAGTGTACAGAGCGGCTGTATATATAGGGTTAGGTAGCTAGTTGTAGTAGttttagctgctgctgctgctgctactactatagCTGTAATAATGCAGCTCTTGCTGAGACCCCTGGTTATTGGGGGGTCTCTGGCTGGCCGCTTGTCTCGGGTAAAGGTCTGCAGGATAAAGCGGAGGACTGCAGAGGGGTCCACACAGCCATGCCAGCCCTGCACCCTGATCAGACACAGCTGGATGAAGACTGGCTCTGTTTCTACTGACTCTACCAGACAGCACAGCTCCTCACCTCACAAGGACGATATTGATATGTCAAAGTTTCCTGTGGAGAGAATAAGAAACTTCAGCATCATCGCTCATATAGATCATGGAAAAAGCACCTTGGCTGACCGGCTACTGGAGATGACAGGTGCCATTGCAAAGACTGAGCGTAATAAGCAGGTGTTGGATAAGCTACAGGTGGAGCGGGAGAGAGGAATCACAGTGAAGGCACAGACTGCCTCTCTGTTCTACCAGCATGATGGAGAGACATACCTACTCAACCTCATCGACACACCGGGTCATGTTGATTTCAGTTATGAGGTTTCACGGTCCATATCTGCCTGCCAAGGAGTCCTGCTGATTGTGGATGCTAATCAGGGAATACAAGCTCAAACTGTAGCCAACTTCTACTTGGCTTTTGAAGCTCAGCTGACCATCAtacctgttttaaataaaATTGATTTGAAAAATGCAGATCCTGACCGAGTGGAGAAGCAAATTGAAAAGATCTTTGATATTCCAAAGGAGGAGTGCATCAGGATTTCTGCTAAACTGGGCACAAATGTGGATCAAGTCCTTCAAGAAGTGGTGAAGAGAATACCTCCTCCCACAGCTAAACTTGAGGAACCGTTTAAAGCCCTGGTCTTTGACTCCACGTTTGACCACTACAGAGGAGTGATAGCCAACATTGCTGTGTTTGGAGGACAGGTCTGTAAGGGCGACAGGATCGTCTCAGCACACATGGGAAAGACGTATGAAGTCAATGAACTGGGAATTCTCAGACCAGATGAACGTCCTACAGAGAAACTctaTGCTGGACAGGTGGGCTATGTGGTTGCTGGGATGAAGGAAGTGAAGGAGGCTCAGATTGGAGATACACTGTATCTCCATAAGCAGCCCGTTGAGGCGCTGCCAGGCTTCAAACCTGCTAAATCCATGGTGTTTGCAGGCATCTATCCTATGGACCAGTCTGAGTACACCAGCCTGCGCAGTGCAGTGGAGAAGCTGACCCTTAATGACTCCAGTGTGACGGTACAGAGAGACAGCAGCCTGGCTCTGGGAGCTGGGTGGAGactggGATTTTTGGGTTTACTTCATATGGAAGTGTTTAACCAGCGTTTGGATCAGGAGTATAATGCTTCAGTTATAGTAACAGCTCCAACAGTGCCGTACAAAGCTGTCCTGTCTTCTGCCAAACTCATTAAGGAGTATGGGGAGGAGGTGGTAACCATCGTGAACCCGGCCCAGTTCCCAGACAAGTCTCAGGTGGTACAGTATTTGGAGCCCATGGTTACTGGAACTATTATCACTCCTGACGACTTTACTGGCAAAATCATTAGCCTCTGTCTgGGCCGCCGAGCCATTCAGAAGAACATGGTTTATATTGATGACCATCGAGTGATGATGAAGTATGTGTTCCCTCTTAACGAGATTGTGGTGGATTTTTATGACCAGCTTAAGTCCATGTCCTCAGGATACGCGAGCTTTGACTATGAGGATGCTGGATATGAACCGGCTGAACTGATTAAGATTGATTTCCTGCTCAATGGGAGACCAGTGGAAGAGCTCACCACTATTGCTCACAAGTAAGTTCAGAATGATGTAAATAGATTAT

Function

symbol description
guf1 Predicted to enable GTP binding activity; GTPase activity; and ribosome binding activity. Predicted to be involved in positive regulation of translation. Predicted to act upstream of or within translation. Predicted to be located in mitochondrial inner membrane and mitochondrial matrix. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 40. Orthologous to human GUF1 (GTP binding elongation factor GUF1).

NR:

description
translation factor GUF1, mitochondrial isoform X1

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K21594 GUF1; translation factor GUF1, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022683543.1 True 2051 mRNA 0.47 14 8840463 8848178

Neighbor

gene id symbol gene type direction distance location
LOC103033398 LOC108431116 coding downstream 51760 8768529 ~ 8788703 (-)
cenpu NA coding downstream 93391 8737654 ~ 8747072 (-)
LOC103025383 NA coding downstream 126144 8703958 ~ 8714319 (-)
irf2 irf2 coding downstream 138182 8677122 ~ 8702281 (-)
enpp6 enpp6 coding downstream 173222 8652410 ~ 8667241 (-)
LOC103033058 gabra2,LOC108431103,LOC108268623,LOC107716031,LOC106611612,LOC107710477 coding upstream 57345 8905523 ~ 8994456 (-)
gabra4 gabra4,zgc:110204,LOC107716030,LOC107589116 coding upstream 178448 9026626 ~ 9075395 (-)
pcgf1 pcgf1,LOC107589114,LOC107678659,LOC107705480,LOC107660820,LOC107710472 coding upstream 743845 9592023 ~ 9603124 (-)
LOC103046764 fgf24,LOC103046764,LOC108431102,LOC107678645,LOC107660805,LOC108268415,LOC107559274,LOC107710462 coding upstream 833254 9681432 ~ 9699163 (-)
tlx2 tlx2,LOC107705478,LOC107589150 coding upstream 921509 9769687 ~ 9787999 (-)
G204178 NA non-coding downstream 15072 8795301 ~ 8825391 (-)
G204078 NA non-coding downstream 324088 8515842 ~ 8516375 (-)
G204066 NA non-coding downstream 412913 8425387 ~ 8427550 (-)
G204032 NA non-coding downstream 629644 8210100 ~ 8210819 (-)
G204029 NA non-coding downstream 682692 8156629 ~ 8157771 (-)
G204217 NA non-coding upstream 170728 9018906 ~ 9049811 (-)
G204219 NA non-coding upstream 212040 9060218 ~ 9067121 (-)
G204221 NA non-coding upstream 217431 9065609 ~ 9066693 (-)
G204222 NA non-coding upstream 256690 9104868 ~ 9105080 (-)
G204227 ap1ar,LOC106611615,LOC106604579,LOC107678622 non-coding upstream 290355 9138533 ~ 9143817 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 1096891 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 2048472 6614604 ~ 6791991 (-)
jph3 jph3,LOC100148063,LOC107714052,LOC107654149,LOC107581833 other downstream 2166535 6594378 ~ 6673928 (-)
trnai-uau_43 NA other downstream 2307934 6532437 ~ 6532529 (-)
trnai-uau_42 NA other downstream 2308795 6531576 ~ 6531668 (-)
LOC103046444 LOC108431107 other upstream 875224 9723402 ~ 9759067 (-)
G204584 NA other upstream 1796076 10644254 ~ 10644687 (-)
G204671 NA other upstream 2735022 11583200 ~ 11584074 (-)
LOC111195729 NA other upstream 4885535 13733713 ~ 13739921 (-)
G205375 NA other upstream 4896175 13744353 ~ 13777621 (-)

Expression


Co-expression Network