G204227 (ap1ar,LOC106611615,LOC106604579,LOC107678622)


Basic Information

Item Value
gene id G204227
gene name ap1ar,LOC106611615,LOC106604579,LOC107678622
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 9138533 ~ 9143817 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU277059
TTTCTAGCAACAATACCACTTCCATAAAGTTAAAGAATACATTAGTGCCAGACTGGGTGTTGTACTCACTGTTTGCGATGAGTGCCGCTACCCTCTGCCTCCACTCTGGCCCTGCTCCTCTGCGCAAGCTGCTCCTTTAGCTTTCGCTCCTTTGCGAGCTTGGCAGCCTCGCGTTGGGCTGCGCATATAGCCTCCTCTTCTAGCCTTAACTTCTCTTCTTGTGCAACTAACTCTGCAGTCAGCTTCTCATCGATTAGTGTCTGCTTGTCGGTGATAGCACCATAGCGTAGTTCCTTGAGATGTCCAATCTCCTCCTCGCTGATGGGCCTGGGACAACTCTGTGAGCTCTCACcCTCATCACTGTCCACCAGGTTCTCAAATTCTATAGTAGTGTGTTCACCAACTGTGCTGCTTCTGAAGTATTTTGAGCCTCCTCCTCTCTGAATTCTGTTGGCTTCCCTCCTGTACAGCCCCAAACAGTGAGTCCAGCAGTTCCCCATGGCATTCTGTCTGAGAGCTGGAGCTtagagacagcagcagcaggagatcACAGTATgaacagatcagatcaga

Function

symbol description
ap1ar Predicted to enable AP-1 adaptor complex binding activity. Predicted to act upstream of or within several processes, including negative regulation of substrate adhesion-dependent cell spreading; regulation of Arp2/3 complex-mediated actin nucleation; and vesicle targeting, trans-Golgi to endosome. Orthologous to human AP1AR (adaptor related protein complex 1 associated regulatory protein).

NR:

description
PREDICTED: AP-1 complex-associated regulatory protein isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU277059 True 573 lncRNA 0.50 7 9138533 9143817

Neighbor

gene id symbol gene type direction distance location
gabra4 gabra4,zgc:110204,LOC107716030,LOC107589116 coding downstream 63138 9026626 ~ 9075395 (-)
LOC103033058 gabra2,LOC108431103,LOC108268623,LOC107716031,LOC106611612,LOC107710477 coding downstream 144077 8905523 ~ 8994456 (-)
guf1 guf1 coding downstream 290355 8840463 ~ 8848178 (-)
LOC103033398 LOC108431116 coding downstream 349830 8768529 ~ 8788703 (-)
cenpu NA coding downstream 391461 8737654 ~ 8747072 (-)
pcgf1 pcgf1,LOC107589114,LOC107678659,LOC107705480,LOC107660820,LOC107710472 coding upstream 448206 9592023 ~ 9603124 (-)
LOC103046764 fgf24,LOC103046764,LOC108431102,LOC107678645,LOC107660805,LOC108268415,LOC107559274,LOC107710462 coding upstream 537615 9681432 ~ 9699163 (-)
tlx2 tlx2,LOC107705478,LOC107589150 coding upstream 625870 9769687 ~ 9787999 (-)
LOC103032746 LOC108416976 coding upstream 726433 9870250 ~ 9878549 (-)
loxl3 loxl3,loxl3a,LOC107758510,LOC107589109 coding upstream 764400 9908217 ~ 9948824 (-)
G204222 NA non-coding downstream 33453 9104868 ~ 9105080 (-)
G204219 NA non-coding downstream 71412 9060218 ~ 9067121 (-)
G204221 NA non-coding downstream 71840 9065609 ~ 9066693 (-)
G204217 NA non-coding downstream 88722 9018906 ~ 9049811 (-)
G204178 NA non-coding downstream 313142 8795301 ~ 8825391 (-)
G204235 NA non-coding upstream 19826 9163643 ~ 9163965 (-)
G204239 NA non-coding upstream 38147 9181964 ~ 9182270 (-)
G204240 NA non-coding upstream 71090 9214907 ~ 9215263 (-)
G204242 NA non-coding upstream 92634 9236451 ~ 9236671 (-)
G204243 NA non-coding upstream 118446 9262263 ~ 9277665 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 1394961 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 2346542 6614604 ~ 6791991 (-)
jph3 jph3,LOC100148063,LOC107714052,LOC107654149,LOC107581833 other downstream 2464605 6594378 ~ 6673928 (-)
trnai-uau_43 NA other downstream 2606004 6532437 ~ 6532529 (-)
trnai-uau_42 NA other downstream 2606865 6531576 ~ 6531668 (-)
LOC103046444 LOC108431107 other upstream 579585 9723402 ~ 9759067 (-)
G204584 NA other upstream 1500437 10644254 ~ 10644687 (-)
G204671 NA other upstream 2439383 11583200 ~ 11584074 (-)
LOC111195729 NA other upstream 4589896 13733713 ~ 13739921 (-)
G205375 NA other upstream 4600536 13744353 ~ 13777621 (-)

Expression


Co-expression Network