G204066


Basic Information

Item Value
gene id G204066
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 8425387 ~ 8427550 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU276860
CAACATTTGCCTTGAACTTCACAGTGGTACACACAGACCAGACCCTTTCTGTATGATCACTGCTTCATCAGTTGATCAGTACACTCTTTTATGATCAGTACGCTGCATTTATGAtcaaaaaacaggaaaataaataacagcaaaacaagcaaaacACATGGgagtgatgatgataatggctCTTTGATGAATTTAAGGAGAACCAGAACAGCAGAAGGCTTTTAAGTAGGTCTGTACAGTGACAGTGGCCGTTTGATTAATGCACCCTAATAAATGCTGTAATTAAAATGGGAAAAGAACATAAAAAGCCCCAACAACAACACATTTTAGCATTCTTTATATCTAGAACCAtatcaatttaataaaaaccATTTCCCCACATATAAGACAAATCATTATTGATATTAGAAAACAAACACCACCCGAATCACCTGAATACCACTTGGAAGCAGCCCTTATCATCaacatacataaacattttTCCAATATAAAGCAAACCACGTAAACCCTACTACTTGTTTTCACAGCAGAGGCTCAATTAAGCTTATAAAGCCAACATGGCATTAAACAGTCCCCTCGTAAGCAATCTGATCTGCATGCTcttaattaaaagaaagagaTCCACGCTGCATTATAATCAATCTGTTCACACTGTGAGATTGTTAAAGGGCTGATTTTAAACTACTTTAATATGCATAGCTGGAGTTTGATAAGATTCCTTTCCTTTGAAGCGCTATTTTAATCTAAAAAGGGAAATATTTAGGGaatcttgcaaaaaaaaaaaaaaagatccataGGGCAGATATGTATtctaaaaaaaaggtgaaacaaGGGTTAGGGATGATACGTAATACGttatgatataatatttatCATAATGCATGACTAATATTCTCTGTTTTCTTATCTCTGAAGCAGAACAGTACAGTCATTATTAAAGAAACTACATGTGAGATTAAAGAGGGGACACTGCTTTACCATCTGAACTCATACAGTATGTTGTTCATCATGACGTTCATACATAATTCAGCAACTGCCTGTTTACACCAGGACACTTCATGTGATTAATATCTGGATTGTCTCCTTATAAAAAATTGCACAGATGCGGTTACACTTATACAGTCCTAATTTACCTACagccagattttatttttagttttttcacgATTATGTTAGAATTTCTGGTTCATGGTATACGGTGCACTTTGATGTAGCTACTGTTGTGGACACTAATCATAAAGTAACTAGCTTACCATAGAAAAGGGCTTTCCAAAGAAGGTGCCTGCATCTTTGCTTGAACATCCTAAATTTAACCATCCAATAACATCCCCACAAATGTTCATACATCTTTGTATTAagcagcaaaaaagaaaaatgtataaacacTGCACATTCTGCAGTGTGACTGTTTCGCATGTGTACATCGCAATTTCAATGCTAAAATTTTAAACTGCAGCCCTAGTAGgatgtttaatttaaacatcGCCGTTTCAACCATAGATGCAGCTCCTTTTCTTTGGGAGAAGGTGGCAATAAGTTATATTCACAACACTATAATCTTTTTGTGTGTTAATGTTCATAGCACAGCAAAATCTTTAGAAGCGGACCAACTGTCACACTGTAAGTTCTACACAAAGTGAAACTTGGATAACGAGGCTGTGAGACCACTTAcagaagtggtttgagtgactGGATTTAGTTGATCAACTTTACCAAGTTAATCTAGCAAGCTACTGTCTATAATACTCTCTGTCATGTTCAGAACAGTTCAAACTTCCGGGAATATAAACGAAGTACAGTAGGAATTAAAGGTTCACAGAGCAGAAGGTGGGAATCTCAGACCCCCGTTTCAGTGATTGGTGCAAAGAATTTGTTTGGACAGTGTTGCATTGATTCATAATTCAAAGTTAAGGAAATCTTCTGCGTTGCCTGCATTAACAGGAAAGTGGGAGGCTCAGTGCACTGAATAACATATTCTGACTAAATTTTACTTACTTCTGCATTTGctttcaactcagtttcaagacgtAAATGttaaatagagtaaataagtgaactgaacttcaggcaatcctttcttttagtgaactttacttaatttatttttgctgaatcaatcctttcttttagtaacatttacttaatttctgcatacaatattacc
>TU276863
CAACATTTGCCTTGAACTTCACAGTGGTACACACAGACCAGACCCTTTCTGTATGATCACTGCTTCATCAGTTGATCAGTACACTCTTTTATGATCAGTACGCTGCATTTATGAtcaaaaaacaggaaaataaataacagcaaaacaagcaaaacACATGGgagtgatgatgataatggctCTTTGATGAATTTAAGGAGAACCAGAACAGCAGAAGGCTTTTAAGTAGGTCTGTACAGTGACAGTGGCCGTTTGATTAATGCACCCTAATAAATGCTGTAATTAAAATGGGAAAAGAACATAAAAAGCCCCAACAACAACACATTTTAGCATTCTTTATATCTAGAACCAtatcaatttaataaaaaccATTTCCCCACATATAAGACAAATCATTATTGATATTAGAAAACAAACACCACCCGAATCACCTGAATACCACTTGGAAGCAGCCCTTATCATCaacatacataaacattttTCCAATATAAAGCAAACCACGTAAACCCTACTACTTGTTTTCACAGCAGAGGCTCAATTAAGCTTATAAAGCCAACATGGCATTAAACAGTCCCCTCGTAAGCAATCTGATCTGCATGCTcttaattaaaagaaagagaTCCACGCTGCATTATAATCAATCTGTTCACACTGTGAGATTGTTAAAGGGCTGATTTTAAACTACTTTAATATGCATAGCTGGAGTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU276860 True 2164 lncRNA 0.35 1 8425387 8427550
TU276863 False 710 lncRNA 0.36 1 8426841 8427550

Neighbor

gene id symbol gene type direction distance location
LOC103028028 NA coding downstream 178437 8230091 ~ 8246950 (-)
LOC111195712 NA coding downstream 1411707 7004048 ~ 7013680 (-)
LOC111195822 NA coding downstream 1967848 6444206 ~ 6457539 (-)
LOC111188205 LOC108424126 coding downstream 1980937 6435530 ~ 6444450 (-)
LOC103037435 NA coding downstream 1989414 6432385 ~ 6435973 (-)
fnta fnta,LOC107678656,LOC107715177,LOC106604549 coding upstream 128848 8556398 ~ 8566032 (-)
snx25 snx25,LOC107556844 coding upstream 148420 8575970 ~ 8648702 (-)
enpp6 enpp6 coding upstream 224860 8652410 ~ 8667241 (-)
irf2 irf2 coding upstream 249572 8677122 ~ 8702281 (-)
LOC103025383 NA coding upstream 276408 8703958 ~ 8714319 (-)
G204032 NA non-coding downstream 214568 8210100 ~ 8210819 (-)
G204029 NA non-coding downstream 267616 8156629 ~ 8157771 (-)
G204022 NA non-coding downstream 358949 8066151 ~ 8066438 (-)
G204019 NA non-coding downstream 375438 8049460 ~ 8049949 (-)
G204001 NA non-coding downstream 429802 7995354 ~ 7995585 (-)
G204078 NA non-coding upstream 88292 8515842 ~ 8516375 (-)
G204178 NA non-coding upstream 367751 8795301 ~ 8825391 (-)
G204217 NA non-coding upstream 591356 9018906 ~ 9049811 (-)
G204219 NA non-coding upstream 632668 9060218 ~ 9067121 (-)
G204221 NA non-coding upstream 638059 9065609 ~ 9066693 (-)
LOC107197584 tenm2,LOC108268421,LOC108431098,LOC107752041,LOC107561160,LOC107670182 other downstream 681815 7456739 ~ 7743572 (-)
map1lc3b NA other downstream 1633396 6614604 ~ 6791991 (-)
jph3 jph3,LOC100148063,LOC107714052,LOC107654149,LOC107581833 other downstream 1751459 6594378 ~ 6673928 (-)
trnai-uau_43 NA other downstream 1892858 6532437 ~ 6532529 (-)
trnai-uau_42 NA other downstream 1893719 6531576 ~ 6531668 (-)
LOC103046444 LOC108431107 other upstream 1295852 9723402 ~ 9759067 (-)
G204584 NA other upstream 2216704 10644254 ~ 10644687 (-)
G204671 NA other upstream 3155650 11583200 ~ 11584074 (-)
LOC111195729 NA other upstream 5306163 13733713 ~ 13739921 (-)
G205375 NA other upstream 5316803 13744353 ~ 13777621 (-)

Expression


Co-expression Network