LOC111195822


Basic Information

Item Value
gene id LOC111195822
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 6444206 ~ 6457539 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022684317.1
ATGGAAGGTGACTTGTGGACTTCTTACAGCccgataacccagaatgcacctctcaGCAGTATCAGCGTAATGCAGGATGAGAAGAGGGTGACGTCATCAAGTACACAGCTGTAccaattacacaaaaaaacccGCCGCTTCCTCCCGTTCTCGGGAGTTCGCACTCGCGATCCGAACTTCCCAAGTCTGTATCTGCCAAGACAGATGGAGTATCCCCTGCTCTTCCTCAGTGCTCTGATTGGGTGGTCTCTGGCATTCATGCCATCTCTGCCACCAGATGGTGAGAGCCTGACACACTCTGTAATGACAATGGAGGCACTGCTCGAAGTCGCAAGCACTGCTTGCAGAGAAGAAGCTCAGGCTAATGGACAGACCTACACTAGACCGGACCCCTTGACCCCACAGAATCTGCTGCTTGCCTGCTTAGGTGCTTCAGAGGAAGCAGGCATATCATCATCAAAGTTCACAGAGGTGCTGGATGAAATCATTTCTCAGAACACTAATATTGATGACCTGAATGGCCTGGGTGGAAGTCCTGCCCACCACTTCAATGACGAAGTACTGGAACAAGGACGGGACATCATTACTGAGGGTGTTTCCGTCATCAAAGCCAGCCTAGGACAGGATGACTTTGAAACAGCCAGGCGTGCACTTGGGGCTGTTACCCATACTCTCCAGGATTTCTACAGTCACAGTAACTGGATTGAGCTGGGAAATAAAGACCCTTACGAAAAGTTGCTGCGCCCTGACCTTCAACTCGACAACCTtgcaggtgtgtttgtgtgtgatgtgttaTGTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022684317.1 True 801 mRNA 0.50 5 6444206 6457539

Neighbor

gene id symbol gene type direction distance location
LOC103037435 NA coding downstream 8233 6432385 ~ 6435973 (-)
mif mif,LOC107680670,LOC107594949,LOC107594906 coding downstream 34567 6407479 ~ 6409639 (-)
clp1 clp1,LOC107750374,LOC107680590,LOC107749782,LOC107594950 coding downstream 42901 6393195 ~ 6401305 (-)
LOC103038082 LOC108424155 coding downstream 77019 6361388 ~ 6367187 (-)
LOC103033238 med19,med19a,LOC107745077,LOC107684830 coding downstream 83490 6344595 ~ 6360716 (-)
LOC111195712 NA coding upstream 546509 7004048 ~ 7013680 (-)
LOC103028028 NA coding upstream 1772552 8230091 ~ 8246950 (-)
fnta fnta,LOC107678656,LOC107715177,LOC106604549 coding upstream 2098859 8556398 ~ 8566032 (-)
snx25 snx25,LOC107556844 coding upstream 2118431 8575970 ~ 8648702 (-)
enpp6 enpp6 coding upstream 2194871 8652410 ~ 8667241 (-)
G203763 NA non-coding downstream 19941 6422781 ~ 6424265 (-)
G203761 NA non-coding downstream 23239 6417268 ~ 6420967 (-)
LOC111195709 NA non-coding downstream 155274 6269259 ~ 6288932 (-)
G203745 NA non-coding downstream 168914 6255462 ~ 6275292 (-)
G203740 NA non-coding downstream 233625 6209914 ~ 6210581 (-)
G203783 NA non-coding upstream 56412 6513951 ~ 6553987 (-)
G203818 NA non-coding upstream 123783 6581322 ~ 6581736 (-)
G203819 NA non-coding upstream 128912 6586451 ~ 6587438 (-)
LOC111195711 NA non-coding upstream 316289 6773828 ~ 6777113 (-)
LOC111195828 NA non-coding upstream 582060 7039599 ~ 7040273 (-)
selenoh selenoh other downstream 38918 6402156 ~ 6405288 (-)
LOC103032694 zdhhc5,zdhhc5b,LOC107594917,LOC107750372 other downstream 51440 6376735 ~ 6392766 (-)
G203734 NA other downstream 253091 6185773 ~ 6191115 (-)
stx3 stx3,LOC106516362,LOC103147491 other downstream 285697 6121487 ~ 6158509 (-)
ids ids other downstream 1061438 5368819 ~ 5382768 (-)
trnai-uau_40 NA other upstream 72500 6530039 ~ 6530131 (-)
trnai-uau_41 NA other upstream 73048 6530587 ~ 6530679 (-)
trnai-uau_42 NA other upstream 74037 6531576 ~ 6531668 (-)
trnai-uau_43 NA other upstream 74898 6532437 ~ 6532529 (-)
jph3 jph3,LOC100148063,LOC107714052,LOC107654149,LOC107581833 other upstream 136839 6594378 ~ 6673928 (-)

Expression


Co-expression Network