AMCG00000460 (tmed10,LOC106608292)


Basic Information

Item Value
gene id AMCG00000460
gene name tmed10,LOC106608292
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15271455 ~ 15276495 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000460
ATGTCTCGGTTCTTTGCGCTACTTCTTCTCCCGACCCTCTTTGGGTCGGCTTTAtctatttctttctatttaccAGTAAACTCTCGCAAATGTTTGCGGGAAGAAATACACAAAGATGTGTTAGTAACCGGTGAATACGAGGTTAGCGAGCAGCCCAACACCAAAACCAATCTTAAGatCATCGACTCCTCTGGCCACATCCTATATTCAAAAGAAGATGCTTCAAAAGGGAAGTTTGCCTTTACAACGGAGGATTATGACATGTTTGAAGTCTGCTTTGAGAGTAAATTCCCTATGGGAACTGGGCGGGTCCCGGACCAGCTGGTCAATTTAGACATGAAGCACGGTGTGGAGGCTAAGAATTACGAGGAGATTGCCAAGGTGGAGAAACTGAAGCCTTTGGAAGTGGAACTCCGGCGACTGGAGGACCTGTCCGAGTCCATCGTTAATGACTTTGCGTACATGAAGAAACGAGAAGAGGAGATGAGGGACACCAATGAGTCCACGAACACCCGTGTCCTGTACTTCAGCATCTTCTCCATGTGCTGCCTGATCGGTCTGGCCACATGGCAGGTCTTCTACCTGCGCCGCTTCTTCAAGGCAAAGAAACTCATCgagtaa

Function

symbol description
tmed10 Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in axis; hatching gland; notochord; pancreas; and polster. Orthologous to human TMED10 (transmembrane p24 trafficking protein 10).

NR:

description
PREDICTED: transmembrane emp24 domain-containing protein 10

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20352 TMED10, ERV25; p24 family protein delta-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000460 True 621 mRNA 0.48 5 15271455 15276495

Neighbor

gene id symbol gene type direction distance location
AMCG00000468 NA coding upstream 8664 15261091 ~ 15262791 (+)
AMCG00000461 clg15h14orf1,LOC106591002,LOC107724257,LOC104921354,LOC107554785,LOC102222511 coding upstream 84116 15185447 ~ 15187339 (+)
AMCG00000456 tgfb3,LOC106590795 coding upstream 147854 15110845 ~ 15123601 (+)
AMCG00000448 NA coding upstream 392338 14872432 ~ 14879117 (+)
AMCG00000447 dlst,LOC107092408,LOC105916992 coding upstream 462179 14799725 ~ 14809276 (+)
AMCG00000462 eif2b2 coding downstream 1961 15278456 ~ 15281462 (+)
AMCG00000473 NA coding downstream 15820 15292315 ~ 15294469 (+)
AMCG00000474 eml5 coding downstream 76482 15352977 ~ 15384001 (+)
AMCG00000478 NA coding downstream 150050 15426545 ~ 15442287 (+)
AMCG00000470 NA coding downstream 344151 15620646 ~ 15641297 (+)
G150484 NA non-coding upstream 20726 15250517 ~ 15250729 (+)
G150475 NA non-coding upstream 42193 15228957 ~ 15229262 (+)
G150460 NA non-coding upstream 110778 15160457 ~ 15160677 (+)
G150459 NA non-coding upstream 111332 15159608 ~ 15160123 (+)
G150458 NA non-coding upstream 116371 15154635 ~ 15155084 (+)
G150506 NA non-coding downstream 19112 15295607 ~ 15299878 (+)
G150563 NA non-coding downstream 338635 15615130 ~ 15619026 (+)
G150642 NA non-coding downstream 914325 16190820 ~ 16191021 (+)
G150686 NA non-coding downstream 1368633 16645128 ~ 16646915 (+)
G150687 NA non-coding downstream 1371410 16647905 ~ 16649574 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 327055 14931778 ~ 14944400 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 1117615 14133138 ~ 14153840 (+)
G150069 NA other upstream 1578866 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 2240602 12966877 ~ 13030853 (+)
G149859 NA other upstream 2543552 12679670 ~ 12727903 (+)
AMCG00000514 NA other downstream 1534958 16811453 ~ 16814365 (+)
G150750 NA other downstream 1659498 16935993 ~ 16938282 (+)
G150811 NA other downstream 2268959 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 2472015 17748510 ~ 17759582 (+)
G150976 NA other downstream 2877369 18153864 ~ 18159321 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_05421189_05424167 MGC64308, TMED10, TMEDA, MGC85513 coding CI01000029 null 5420443 ~ 5424439 (-)
eurasian perch (Perca fluviatilis) G24782 NA non-coding NC_053114.1 CM020911.1 93035 ~ 94652 (-)
mexican tetra (Astyanax mexicanus) G24772 tmed10 non-coding NC_035899.1 CM008302.1 39382242 ~ 39387475 (+)