AMCG00000483


Basic Information

Item Value
gene id AMCG00000483
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16023883 ~ 16029161 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000483
ATGCTGCCGGGGAGACGGGGAGCTGGCAGGCAGCACACAGCCCGCCCGGCTCTACAGCACAAAGTCCTGCTGGAGCAGGGGGAGCTGCCATGCGCCCTGACTGCgTCTCTGGATCCAAATGTCAAGTCCAAAGGAGACGACTTCTGTCAGGGAGCAGCCGGGTGTGAcgaGCTCCCTCTATCTAAAGAAATGGAGTTACAGACACGCCTCTGGAATAAGGACTGGGCGACTTTCTTAAAATCCTGGATCACCATACTGCTGGGTCTCCACGTACAATTTTACGGGGCCGCCGCATGTCCCGAGGAGTGCCGCTGCGACAAAACTTTCGTTTATTGTAACGAACGGAGTCTGACATCAGTGCCTCTGGGAATACAGGAGGGTTACAAGACGCTCTACCTCCACAACAACCAAATCAACAATGCTGGATTCCCCGTGGAGCTGCACAACCTCGTCTCAGTGAAAACAGTGTTCTTATACGGCAACCAGCTGGACGAGTTTCCCCTGAACCTCCCCAAAAATGTGCGGGTCCTCCACCTGCAGGAGAATAATATTCAGACTATTTCCAGGGCGGCTCTGGCCCAGCTGTCCAAACTGGAAGAGCTGCATCTGGACGATAACTCCATCTCCACTGTTGGGATTGAGGAAGCTGCCTTCCGGGAAGCCGTTAGCCTTAAGCTCTTATTTTTATCGAAAAACCACTTAAGCAGCGTGCCAATTGGGCTGCCTCTGGACTTGAAAGAGCTCCGGCTTGATGAGAACCGAATTGCTGTCATTGCTGAGCAGGCGTTCAAGAATGTCACACAGCTCGAACGCTTAATTCTGGATGGAAATCTCTTGACTAACGAAGGAATAGCCAGGGGAACCTTTAAGGATCTGGTAAACCTCAAAGAGTTGTCTATGTCACGAAACTCCCTCACTGTTCCTCCGCCTGACCTCCCTGGTGAGTTTTTAGTGAAACTCAGCTTGCAGGATAATCAAATGAATGAGATCCCTGTGACAGCCTTTTCTAACCTACGCCAGCTTGAGAAATTGGATATTTCAAACAACCATCTGCAGTCACTGACACAGGGGGTCTTTGATGGCCTTATAAGCCTGAGACAGCTCACTGTTCGGAGCAACATGTGGTATTGTGACTGTAACATTAAATGGGTAACAGAGTGGTTGAAATCTCTGCCAGCAACTCTTAATGTACGTGGATTTATGTGCCATAAGCCTGATATAGTACGAGGCATGGTAATCAGAGAGCTAAATCTGAATCTGATCATTTGCCCCAATAGCACAGCACCTGCCCCACGATATACGCAACCACCCACAGAGGCCCTGCCGTCTACAATCCCAGCAAGGCCAACAACAGCCACATCAGATTCATCCATTTCAGATTTGACTTCACCTACACCACCATCCCCTCCGTTTCCTCTGCCTACAGCCGAGGGGCAACCTCCCCAGGACCCTCTTCAGATCTCTTTTAGTTTCGTAAACGACACCTGCATTCAAGTCAGCTGGATGTCTGTCTTTTCAGTAACGGCGTACAAAGTCTCTTGGGTTAAAATGGGCCACAGCTTGACGGGAGATATTGTGCAAGAAAGGATGGTCAGTGGAGAACGACAGAGACTCAGTCTGGTGAACTTGGAACCCAAATCCACTTATCGTATTTGTATAATCCCTTTAGATGCTTTCAATAACTACCGCCCAGGAGATGATACTATATGTTCAGAGGCTACAACCAAGTCTACATCTTTTAACTCTAATAATAAGGCCTCTGGCCCAGAACAGGCCACTCAACAGAATCCAAGCTCACCTTTTCTCCTCGCTGGCTTGATAGGAGGGGCTGTGATTGTTGTCCTGGTGGTTTTGCTCAGCATATTTTGCTGGCACATGCACAAGAAAGGAAGGTATTCCTCCTCCAAATGGAAATACAACCGAGGAAGAAGAAAAGATGATTACTGTGAAGCAGGGACTAAAAAGGATAATTCCATTCTGGAAATGACTGAAACCAGCTTTCAGATAGTCTCCTTAAATAATGAACAGCTTCTCAAAGGAGATTTCCGGATACAACCAATATACACCCCGAACGGGGACCTTGGCTTCAGAGACTGCCACATA

Function

GO: NA

KEGG:

id description
K16362 FLRT; leucine-rich repeat transmembrane protein FLRT

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000483 True 2103 mRNA 0.49 3 16023883 16029161

Neighbor

gene id symbol gene type direction distance location
AMCG00000489 NA coding upstream 265436 15752425 ~ 15758447 (+)
AMCG00000485 gsc,LOC101076325,LOC102791948,LOC103364184 coding upstream 287279 15734796 ~ 15736604 (+)
AMCG00000484 dicer1,LOC107552827,LOC107668604,LOC107671118 coding upstream 329596 15678702 ~ 15694287 (+)
AMCG00000471 NA coding upstream 354530 15650291 ~ 15669353 (+)
AMCG00000470 NA coding upstream 382586 15620646 ~ 15641297 (+)
AMCG00000491 galc,LOC107372531 coding downstream 169120 16198281 ~ 16208276 (+)
AMCG00000492 NA coding downstream 179544 16208705 ~ 16215471 (+)
AMCG00000490 papola,LOC107560206,LOC107747941,LOC107678672 coding downstream 187121 16216282 ~ 16232431 (+)
AMCG00000486 vrk1 coding downstream 251745 16280906 ~ 16291497 (+)
AMCG00000495 ccnk,LOC107560198,LOC107678663 coding downstream 711523 16740684 ~ 16745744 (+)
G150563 NA non-coding upstream 404857 15615130 ~ 15619026 (+)
G150506 NA non-coding upstream 724005 15295607 ~ 15299878 (+)
G150484 NA non-coding upstream 773154 15250517 ~ 15250729 (+)
G150475 NA non-coding upstream 794621 15228957 ~ 15229262 (+)
G150460 NA non-coding upstream 863206 15160457 ~ 15160677 (+)
G150642 NA non-coding downstream 161659 16190820 ~ 16191021 (+)
G150686 NA non-coding downstream 615967 16645128 ~ 16646915 (+)
G150687 NA non-coding downstream 618744 16647905 ~ 16649574 (+)
G150689 NA non-coding downstream 652754 16681915 ~ 16722627 (+)
G150767 NA non-coding downstream 1167316 17196477 ~ 17501853 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 1079483 14931778 ~ 14944400 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 1870043 14133138 ~ 14153840 (+)
G150069 NA other upstream 2331294 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 2993030 12966877 ~ 13030853 (+)
G149859 NA other upstream 3295980 12679670 ~ 12727903 (+)
AMCG00000514 NA other downstream 782292 16811453 ~ 16814365 (+)
G150750 NA other downstream 906832 16935993 ~ 16938282 (+)
G150811 NA other downstream 1516293 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 1719349 17748510 ~ 17759582 (+)
G150976 NA other downstream 2124703 18153864 ~ 18159321 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017937 NA non-coding NC_007131.7 CM002904.2 11097393 ~ 11178022 (-)