AMCG00000491 (galc,LOC107372531)


Basic Information

Item Value
gene id AMCG00000491
gene name galc,LOC107372531
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16198281 ~ 16208276 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000491
ATGACCAATACTACCGCATCACATGACgCCACTTCTCGACTTCTGGTAAACTATCCAGAGCCTTACCGTAGTCAGATCTTGGATTACTTGTTTAAGCCAAACTTCGGCGCCtctttacacattttgaaagttgAAATTGGGGGTGATGCACAAACAACAGATGGAACCGAATCCTCTCACATGCACTACAAAGATGATGAGAACTACTTCCGGGGTTATGAGTGGTGGTTAATGAAGGaagcaaagaaaagaaacccaaaCATAACTCTAATAGGATTGCCTTGGGCTTTTCCTGGATGGGTTGGGTCTGGAAAGAACTGGCCATATGACTTTCCTGATATAACAGCTTATTATGTTGTATCCTGGATTATTGGAGCCAAACAGTACCATGACTTGGACATTAATTATGTAGGGATTTGGAATGAAAGGAAATTTGACACCAAATACATAAAGCTCCTGCGATACACACTGGATAAGAGTGGTTTGAAAGGAGTTAAGATCATAGCCAGTGATAACCTCTGGGAACCAATAACAATGTGCATGCTTATTGATCAAGAACTTCACGATGCAATTGATGTAATAGGGGCCCATTATCCAGGGACTCTTACAGTATCTGAAGCACTGATGTCAGATAAGCAGCTGTGGTCCTCGGAGGATTACAGCACTTTCAATGATGACGTTGGAGGAGGATGCTGGGCCCGTATTCTCAATCAGAACTATGTCAACGGACGGATGACTGCCACCATATCCTGGAACTTGATTGCCAGTTATTATGAGGAACTTCCATTTGGACGAGATGGTTTAATGACTGCCGAGGAACCATGGAGTGGGAACTATGTTGTGGAGTCCCCTATATGGATAACAGCCCACACAACCCAGTTCACCCAGCCAGGATGGACCTACCTGCAGACTGTTGGGCATCTGTTGAACGGTGGAAGTTATGTTGCCCTAACAGATGGGTTAGGAAATCTCACAATTGTCATAGAAACAATGACACATGATCATTCGGTTTGTATAAGGCCTCCACTCCCTGCCTTCAATGTTTCTGCACAAAATGCAACTTTCAATCTGAAAGGATCTTTTAGCTCTCTCGAAATGCTTCAAGTATGGTATTCCAGATTTGACTTCAAAACGAATAAGTCTAAATTCTTCCAGAAGCTCGAACCAATCAAGCTTTCTCGTGGATCATTTACCTTGAACCTGAATGTGGATGAGGTTTACACTTTAACCACATTAAAAACAGGCAACAAGGGCACCTACCCTAAGCCACCTGACTCGGCTCCGTTCCCTAAGCAGTACAAGGATAATTTCAACGTTCGTAACCCTGCTTTCACTGAAGCCCCAGATTTTGCTGACCAGACCGGAGTGTTTGAATACTTCATAAACATGACTGATCCAGGAGACCATGTGTTTACCTTGAGACAAGTAGTCACTCAGAGGCCTGTAACTTGGGCTACTGATGCTGACCAGACAATTAGCATCATTGGAGACCATGCATGGCAGAACATATCCTTGACTTGTGACATATACATTGAAACGCCCGAAACAGGGGGAGTGTTTGTAGGTGGAAGagtcaataaaggaggaggGTCTGTACGAGATGCAAAAGGCATTTTCTTCTGGGTGTTTGCAGACGGTACTTACAGGGTCACCAATGACATCTCTGGAAACATTGTGATGGCCAAAGGCTTATCAGGAACAAGAGCAGGTGTTTGGCATACATTAACCCTAAATATCGAGGGTGATTTTGCCTCCGGACTGCTGAATGGATACCCGCTGTGGAAGAATGCAACTATTCTTGGGCCCAGTAACGGCTGGGCAGCTATAGGGACGAGCACTTTTGAATTCGCGCAATTTGATAATTTTTACGTGAATGCAAACTAATTAgtaatttttatacatttacaacataaaatatgAGAAGTGACCTTGAGCTCACATTGTGATGTCAATCTCTGTCAATTGCGCACATACCACTTATTTTCCTGTCATTACCCTGTGAttgaatttgacattttattggacattgatttttaaatattttttcaattaccatgtttaaaattaaaacaagttttatCAAGTTTCAGTTCTTCTGAAAAGAGATTAGGTTTCTCAGACCCAGTGCctttaaacttaatttaaatgtgatctacagtgtgaaaaatatttaataacatactttTATCCATCAGTTTCCGCTTTATAAAAATGTTCGACATTTTACTCGGAAAAACATAATGTTCACAACTTAACATGATAACAGAGAATATGCTTTAATATGTACtatgtacactttttttttaataaccttaTCTGACACACTTCTGTGAAATGTCTCACCATCTAAACTGTTTTTTATacggagaaaaaaaaagggaatattAACACTTGCAAATAGGTACTGTTTCAATTCCATCTTTtatgcagttatttattatattgttttaatatatatgtattgacTCGTTCTATAGAAAATGCTGGACATGCAATGCTGCCACtagatttaaaatgcactggGTTTCAGAGCTTACCAACAATGGGTGGACGGTTTAATGTATGGTGAATGTTAATACGATAAAACAAAATTTAATGATCTGTGTATCGTGCCTTTTGTTCTACCTTGGTTATATAAGGAATGTCATTTgcactgtttaatttgattaaaatgtattattaaaataaa

Function

symbol description
galc Enables galactosylceramidase activity. Involved in galactosylceramide catabolic process. Predicted to be located in lysosomal lumen. Predicted to be active in lysosome. Implicated in Krabbe disease. Biomarker of Creutzfeldt-Jakob disease and Mycoplasma pneumoniae pneumonia.

NR:

description
galactocerebrosidase precursor

GO:

id name namespace
GO:0006683 galactosylceramide catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0004336 galactosylceramidase activity molecular_function

KEGG:

id description
K01202 GALC; galactosylceramidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000491 True 2689 mRNA 0.39 17 16198281 16208276

Neighbor

gene id symbol gene type direction distance location
AMCG00000483 NA coding upstream 169120 16023883 ~ 16029161 (+)
AMCG00000489 NA coding upstream 439834 15752425 ~ 15758447 (+)
AMCG00000485 gsc,LOC101076325,LOC102791948,LOC103364184 coding upstream 461677 15734796 ~ 15736604 (+)
AMCG00000484 dicer1,LOC107552827,LOC107668604,LOC107671118 coding upstream 503994 15678702 ~ 15694287 (+)
AMCG00000471 NA coding upstream 528928 15650291 ~ 15669353 (+)
AMCG00000492 NA coding downstream 429 16208705 ~ 16215471 (+)
AMCG00000490 papola,LOC107560206,LOC107747941,LOC107678672 coding downstream 8006 16216282 ~ 16232431 (+)
AMCG00000486 vrk1 coding downstream 72630 16280906 ~ 16291497 (+)
AMCG00000495 ccnk,LOC107560198,LOC107678663 coding downstream 532408 16740684 ~ 16745744 (+)
AMCG00000512 NA coding downstream 587817 16796093 ~ 16801794 (+)
G150642 NA non-coding upstream 7260 16190820 ~ 16191021 (+)
G150563 NA non-coding upstream 579255 15615130 ~ 15619026 (+)
G150506 NA non-coding upstream 898403 15295607 ~ 15299878 (+)
G150484 NA non-coding upstream 947552 15250517 ~ 15250729 (+)
G150475 NA non-coding upstream 969019 15228957 ~ 15229262 (+)
G150686 NA non-coding downstream 436852 16645128 ~ 16646915 (+)
G150687 NA non-coding downstream 439629 16647905 ~ 16649574 (+)
G150689 NA non-coding downstream 473639 16681915 ~ 16722627 (+)
G150767 NA non-coding downstream 988201 17196477 ~ 17501853 (+)
G150831 NA non-coding downstream 1447300 17655576 ~ 17702341 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 1253881 14931778 ~ 14944400 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 2044441 14133138 ~ 14153840 (+)
G150069 NA other upstream 2505692 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 3167428 12966877 ~ 13030853 (+)
G149859 NA other upstream 3470378 12679670 ~ 12727903 (+)
AMCG00000514 NA other downstream 603177 16811453 ~ 16814365 (+)
G150750 NA other downstream 727717 16935993 ~ 16938282 (+)
G150811 NA other downstream 1337178 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 1540234 17748510 ~ 17759582 (+)
G150976 NA other downstream 1945588 18153864 ~ 18159321 (+)

Expression


Co-expression Network