AMCG00000506 (LOC107680771)


Basic Information

Item Value
gene id AMCG00000506
gene name LOC107680771
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17427522 ~ 17430497 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000506
ATGTCCAGGACAGGGAACGCAGAGAGAGGTGAATTAGTTATCCCAGTACTTGTAGAAGACCCCTTAGAAATTCCTCCTATAGCTACTCGTGCACCTTTCATTACCCTCCCCCCAACCTTTCGCCCCCTCCTTACCATTATTGAGACCACCAAAGAGTCCCTGTCCATGACCTCTGAGGCGGGGTTACCTTGCTTGTCGGACCAAGGCAGCGATGAATGTGATGATGATGGCTTGGTGATATCTGGGTATGGCTCAGGGGAAGCTTTTGACTCTAACCTGCCCCCTACTGATGATGAAGATTTTCACACCACCTTCTCCCTGGTAACAGATAAGACCTTGTCTACGTCGGCCTTTGAAGGTGGCTACAAAGCTCATGCGCCTAAGTGGGAATCCAAGGATTTTAGACCTAACAAAGCCTTCGAATCTGGTAGGACTACTACCACATCTTTATCCCCTGAGCTGATTCGCTCCACAACTTCTTCCACGCCCGAAATGGTGCCCAAACTGCCAGCAGGCAAAATGAATAACCGAGAGCTTAAACCCCAGCCAGACATAGTCTTGCTTCCATTGCCCACTGCCTATGAGATAGACAGCACAAAGCTGAAGAGCCCATTAATAACCTCGCCCATGTTCCGTAATGTACCCACAGCAAACCCCACGGAGCCAGGCGTCAAACGGGTTCCGGGGGCTTCGGAGGTGGTCCGCGAATCTAGCAGCACAACTGGAATGGTCGTCGGAATTGTTGCTGCGGCTGCTTTGTGCATCCTAATTCTCCTGTACGCTATGTATAAGTACAGAAACAGGGACGAAGGATCTTACCAGGTCGATGAAACGAGAAATTACATAAGCAATTCAGCACAGACAAACGGCGCGGTCGTCAAGGAGAAACAGCAAAGTGCGAAAAGCAGcaacaagaaacagaaaaacaaggacaaagaGTATTACgtgtaaaaaaaagaatatataataaaatatatgtaaaaaagaaagaactaTATTATAAAATTACCATATTGGGAGCTGcaattaataagaaaaatacaaatgaaaaagaacTGAAAACTCCTACTGCACGGAGACAATGAACtttgaaatgtactgtaatataaagCACACTTACTATTGTAAGCATACCAAGATGGCTAATAGCGACATTAGTGACCTTATTCTTCTATCTGGTCGGAGAAGTTATCAGTGTAGAATACTTCACAGCTATATCATTATCCCAAGTGACTTTTACAGATATGTGATCCTTGGCGtaaatcttgttttttgtaACCCTGTACAAATATTTTGGCCATTTCAAGCATGTATGCGACATGTAGTGCTGGCATCTTTCTGAGAGtgggtgagaaaaaaaaaggactattgccataaaaaatgacaaatttgtattgtttctacATTATGAAGTGTGGTGTCTTATAAGTTTTGCTCTGTGCAAAAAcactgtattaatattaaatgaaacaaacaaaaaaatggtaAGGTTAAACAGATCAGCATTGATCTTTATGGCGTCGATTATCCAATTCCACCTAACTCTTAGCTTTTAATTGTACAACATACATTGTACCTGAAACCCGACACGGAGCTGAGAGGAGATGTTGGATTTTCTAGTCTCGGTGAAGTATCTGATTGTAAGTGCATGCCATCAAATGCTATATGGTGTTCAACTTCGCTTGAACAGATGTATCAGGCCAAACGATTAATCATCAGAGTtacattcctttttaaaaaaacaagcaaaacaaaacgaaacaaaaaaaaatatccaggTACATTTTCTTCCCCGCCAGTACCAGTATCTTACAGCCTTCAGCGCAATGGCTCCTCCCTGCCCGTCTCTTTTTCATTGAGCTGCTGTGACAGAGTAATCTTGTGACGTCTGATGGAGGACTGGTACAGTACTATAACACTGTTAAGGAtgtttaaacagaaataaatctaaTGTGAAAGTGTGAATTTTATCTGTTGTCACAGTCAGCTGTGTCAAAcaacaaatttgtttacatattttattacattatagcTGTTGTACTTTGTAGGTAGATATTGTACATAAAATTTaagttgtaattttttttagtattttattgtacagACTGATCATTTGGTTTATCAGTGTATTTCATGAGATTCAAAACTGTAATCTGATATGAAGAAAGACTTTGGAgcaacaaaaatatacatattttgtaaagaggaaaaaaaaaaactattgttaGGTTAGGAATCTAATCTTTCTCGCTGATGTCGCATGAATATTTGACTACTGGAAGTTgtcaatcaaatacaaaatgccctTCTTAATTGTATCAAGGCTTCCTTGTTATCAATTattttagtgttatttttttattttcaaaggaaaaactaaatccaATAAAGAGAGATTTGAATGGTGTTAAAGCACGGTTCAGACAACCccatgataaaaacaaaatgtgattacACCTCGATGTCTATTGCTGCGGATTGCTGTTACAGAGTCTTGTGAAATTACTTCTGgctatttttttatgatttatttattctccgtttcttttttgtgtacacttatttatgattttttttctgatcaATATGTGCAGACTGTATGTGGGCTTTCAacatgttcttttgtttttttaccaaaatttaaa

Function

NR:

description
PREDICTED: neurexin-3a

GO:

id name namespace
GO:0051965 positive regulation of synapse assembly biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001525 angiogenesis biological_process
GO:0090129 positive regulation of synapse maturation biological_process
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K07377 NRXN; neurexin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000506 True 2645 mRNA 0.39 2 17427522 17430497

Neighbor

gene id symbol gene type direction distance location
AMCG00000507 NA coding upstream 27175 17377382 ~ 17400347 (+)
AMCG00000505 NA coding upstream 71699 17340772 ~ 17355823 (+)
AMCG00000509 nrxn3 coding upstream 173897 17211968 ~ 17253625 (+)
AMCG00000508 NA coding upstream 233406 17191781 ~ 17194116 (+)
AMCG00000504 nrxn3,LOC101487700,LOC107751785,LOC102792091,LOC107676277 coding upstream 244442 17170250 ~ 17183080 (+)
AMCG00000530 NA coding downstream 99220 17529717 ~ 17539409 (+)
AMCG00000526 NA coding downstream 289152 17719649 ~ 17748022 (+)
AMCG00000527 psmc1b,psmc1 coding downstream 330206 17760703 ~ 17768088 (+)
AMCG00000520 LOC107670363,LOC107724957,LOC105896953 coding downstream 364851 17795348 ~ 17800754 (+)
AMCG00000542 ralgapa1,LOC107589631,LOC107693153,LOC107725466,LOC107586611 coding downstream 453332 17883829 ~ 17938428 (+)
G150689 NA non-coding upstream 704895 16681915 ~ 16722627 (+)
G150687 NA non-coding upstream 777948 16647905 ~ 16649574 (+)
G150686 NA non-coding upstream 780607 16645128 ~ 16646915 (+)
G150642 NA non-coding upstream 1236501 16190820 ~ 16191021 (+)
G150563 NA non-coding upstream 1808496 15615130 ~ 15619026 (+)
G150831 NA non-coding downstream 225079 17655576 ~ 17702341 (+)
G150877 NA non-coding downstream 438801 17869298 ~ 17870290 (+)
G150886 NA non-coding downstream 519437 17949934 ~ 17971252 (+)
G150909 NA non-coding downstream 543828 17974325 ~ 17974800 (+)
G150913 NA non-coding downstream 564062 17994559 ~ 18063346 (+)
G150750 NA other upstream 489240 16935993 ~ 16938282 (+)
AMCG00000514 NA other upstream 613157 16811453 ~ 16814365 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 2483122 14931778 ~ 14944400 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 3273682 14133138 ~ 14153840 (+)
G150069 NA other upstream 3734933 13690839 ~ 13692589 (+)
G150811 NA other downstream 114957 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 318013 17748510 ~ 17759582 (+)
G150976 NA other downstream 723367 18153864 ~ 18159321 (+)
AMCG00000550 NA other downstream 980946 18411443 ~ 18419576 (+)
AMCG00000573 NA other downstream 1059354 18489851 ~ 18530757 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012015 nrxn3a coding NC_007128.7 CM002901.2 16906523 ~ 17130942 (-)
grasscarp (Ctenopharyngodon idella) CI01000311_00021111_00021818 NRXN3 coding CI01000311 null 19442 ~ 22381 (+)