XLOC_005909 (zgc:154058)


Basic Information

Item Value
gene id XLOC_005909
gene name zgc:154058
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 18545819 ~ 18624235 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011661
CCACACGGCGGGACACGAGACAGCACTGATCTTCCGAGAGCAACGAGGCTCCAGAATTccgccgaaaaaaaaaaacaccgacGAGCGAAGCCACAACATCCCAAAGCCGCTGTCATCTGGATGCTTGAGGAGTAAAGATAAAATTGTATCCGCTACCGATGATTGACGTTTCTTTTCTGAAGAGTCTGCGCTCCGTCTGAGGATTTAACAAAGGTGGGAGACGCGACCGCGGTCCCCAAAAACAAGGGGGAGGTATGATCTTTAAGATAAGCCTATTTGGGGTCATGCAACGGCTATAAATGCACATTGATGAGCAGAGGGAGACAGGCTGGCGAAGGCGAAAGAAGTGGCTGTTTTGAGGGGAGCAGTAGAGGATCGTGTGCTGGAGATGTCTCTGTGGATGATCTTACCCGTCAGCCTCCCAGCTCTCACCATCACTGGAATATGGGTCGTGTATGCTATGGCCTTATATAACCAGCATGTCTGTCCTGTGGACAACTGgaTGTATAACCAGTCATGTGAGGAGGATCTGGTAATGCAGAGAGGACCAACCTTGTGCTGTACTCTGGACAACGTCCCTCTCATAAGTAAATGCGGGACTCTTCCTCCAGAGAGCTGCTTCTTCAGTCTCATCTGCAGCACCGGATCCTTTATGGTGATGGTGATTGTGTTGCTGCGCTATGCCCATGTGATAGAGAAACACCAGAACTGTGTGTTGAACACAGCAAGTCTCTCCACCGGCTGGATCTGTGCTGCTGGACTCATTATGGTCGGCAATTTCCAGGTGGATTACGCTAAAGTTCTCCACTATGTTGGAGCAGGTGTGGCCTTTCCCACCAGTATGCTGTTTGTGTGCTTGCAGTCTGCACTGACCTACCGCCTGGCCAAGACTCAGGGAGAATATAACATGGGTCATTTGCGCCTCTTCATGACCCTGCTGGCCTTCGTAGCCTTGGTGCTTAGTGGGGTGTTTTTTGTCCAGGAGAGTTTTATCCTGCAACATGCTTCAGCCATTTTCGAGTGGGTCTTCTGTGTCATTATTATGCTATTCTATGGCACATTCGCTTTTGAATTCGCCGGGATATCTAGTGACACGATGATGGTGCTGGCCCGAGGACAATCTTTACCCTCCGTAAGCCGAGACCACAAAATGGAGTCTCTAAGTGGAGCCAATCAGCACCAACCAGAGAGTCTGTCCATATTATAA
>TCONS_00011662
CACTGATCTTCCGAGAGCAACGAGGCTCCAGAATTccgccgaaaaaaaaaaacaccgacGAGCGAAGCCACAACATCCCAAAGCCGCTGTCATCTGGATGCTTGAGGAGTAAAGATAAAATTGTATCCGCTACCGATGATTGACGTTTCTTTTCTGAAGAGTCTGCGCTCCGTCTGAGGATTTAACAAAGGTGGGAGACGCGACCGCGGTCCCCAAAAACAAGGGGGAGGTATGATCTTTAAGATAAGCCTATTTGGGGTCATGCAACGGCTATAAATGCACATTGATGAGCAGAGGGAGACAGGCTGGCGAAGGCGAAAGAAGTGGCTGTTTTGAGGGGAGCAGTAGAGGATCGTGTGCTGGAGATGTCTCTGTGGATGATCTTACCCGTCAGCCTCCCAGCTCTCACCATCACTGGAATATGGGTCGTGTATGCTATGGCCTTATATAACCAGCATGTCTGTCCTGTGGACAACTGgaTGTATAACCAGTCATGTGAGGAGGATCTGGTAATGCAGAGAGGACCAACCTTGTGCTGTACTCTGGACAACGTCCCTCTCATAAGTAAATGCGGGACTCTTCCTCCAGAGAGCTGCTTCTTCAGTCTCATCTGCAGCACCGGATCCTTTATGGTGATGGTGATTGTGTTGCTGCGCTATGCCCATGTGATAGAGAAACACCAGAACTGTGTGTTGAACACAGCAAGTCTCTCCACCGGCTGGATCTGTGCTGCTGGACTCATTATGGTCGGCAATTTCCAGAGCAAAGAGCTGCCATGATCTGACAGGCGGGAGAGGCGGGAATGAGCACGTGTCCTGAGCGCCACATCTGCACCTCATCAGCAGTCCTGCCTGCCCTTCTGGAGCAGTGCCATCCCACCGCTGCAGTGTAGGATGACGAGGACGCAGGCAGACTACCATTATTAGCATCAGGAAAAGGGGAAGTCACATTATGTAACTGTGGATACAGTGTTTCAGTATAGCAGATTTGATTAAACCTGATAGTCCTGATGATCTTGGAATATAAGTTTTGGAAATAAGTGGCTCCGCAGACTAGATTTAAAGAACAAAACCTCCTGGATTGTGTCCTGTTTATAGAAACAGGTGTGTGGCTGCTCTGTTCCAGTAAACCTGTCTGAGCCTGCTGAAAGAGTTTCCTTAAAAATGAAAGCACTAGATATTGAAATGAGTTTAGTTTTCCTGAAAATGCTTCAAAGTGGTTTGGATTTATTTTGATctttagtatttttaaatattgcagaACCTAAAGATGCTAGTAATAATTACCAACAAGACTTTCGATTATTACAAATAAACACCTGATATCCCTCTCGTG
>TCONS_00011663
CGCTGTCATCTGGATGCTTGAGGAGTAAAGATAAAATTGTATCCGCTACCGATGATTGACGTTTCTTTTCTGAAGAGTCTGCGCTCCGTCTGAGGATTTAACAAAGGTGGGAGACGCGACCGCGGTCCCCAAAAACAAGGGGGAGGTATGATCTTTAAGATAAGCCTATTTGGGGTCATGCAACGGCTATAAATGCACATTGATGAGCAGAGGGAGACAGGCTGGCGAAGGCGAAAGAAGTGGCTGTTTTGAGGGGAGCAGTAGAGGATCGTGTGCTGGAGATGTCTCTGTGGATGATCTTACCCGTCAGCCTCCCAGCTCTCACCATCACTGGAATATGGGTCGTGTATGCTATGGCCTTATATAACCAGCATGTCTGTCCTGTGGACAACTGcggatgaccttccagctgcagcccatcactaggaaacaatcattcacactcacacacactcatacactacagacaatttagctaacccaattcacctgtagtgcatgtctttggactgtgggggaaacccgagcagccagaggaaaccccctcgaacacggggagaacatgcaaactccactcagaaatgccaactgacccagccgagactcgaactagcaaccttcttgctgttggatgtttcctgtgttcgcgtgggtttcctccgggtgctctggtttccctaacaagtccaaagacatgtggtatgggtgaattaggtaagctaaattgtccacagtgtatgcatgtgaatgagtgtgtatggacgtttcccagtgatgggttgcagctggaaggacatccgctgcgtaaaacatatggataagttggtggttcattctgctgtggtgaccccagattaataaagggactaagccgaaaagaaaatgaatgaatgaatagtttcaTTTGCTTAAGA

Function

symbol description
zgc:154058 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0010506 regulation of autophagy biological_process
GO:0005764 lysosome cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-48 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000069795

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011661 False 1207 mRNA 0.50 8 18545819 18624235
TCONS_00011662 False 1335 mRNA 0.47 7 18545842 18601498
TCONS_00011663 True 914 mRNA 0.48 4 18545926 18556584

Neighbor

gene id symbol gene type direction distance location
XLOC_005908 ftr14l coding upstream 5899 18533005 ~ 18539920 (+)
XLOC_005907 tlr4bb coding upstream 16957 18523661 ~ 18528862 (+)
XLOC_005906 tlr4al coding upstream 22441 18520738 ~ 18523378 (+)
XLOC_005905 tlr4ba coding upstream 28366 18514788 ~ 18517453 (+)
XLOC_005904 si:ch211-198a12.6 coding upstream 32983 18507592 ~ 18512836 (+)
XLOC_005910 selenou1a coding downstream 35090 18659325 ~ 18669575 (+)
XLOC_005911 pdzd7a coding downstream 77671 18701906 ~ 18783485 (+)
XLOC_005912 CR932361.1 coding downstream 85014 18709249 ~ 18709363 (+)
XLOC_005913 CABZ01032351.1 coding downstream 527033 19151268 ~ 19155959 (+)
XLOC_005914 eif3s10 coding downstream 659701 19283936 ~ 19317569 (+)
XLOC_005902 BX927142.1 non-coding upstream 163414 18382289 ~ 18382405 (+)
XLOC_005898 NA non-coding upstream 304825 18233452 ~ 18240994 (+)
XLOC_005891 NA non-coding upstream 1078999 17464216 ~ 17466820 (+)
XLOC_005888 NA non-coding upstream 2215607 16329149 ~ 16330212 (+)
XLOC_005886 NA non-coding upstream 2266988 16261112 ~ 16278831 (+)
XLOC_005918 CR762487.1 non-coding downstream 1402732 20026967 ~ 20027084 (+)
XLOC_005919 AL954359.3 non-coding downstream 1624658 20248893 ~ 20249009 (+)
XLOC_005920 NA non-coding downstream 1759888 20384123 ~ 20517304 (+)

Expression


Co-expression Network