G157577 (LOC100846954)


Basic Information

Item Value
gene id G157577
gene name LOC100846954
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 3184721 ~ 3185154 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU198444
ccccaaagcataatgtttccacctccatgtttgatggtggggatggtgtttttggggtcataggcagcattcctcctcctccaaacacagcgagttgagttgatgcctaagagctcgattttggtctcatctgaccacaacactttcacccagttctcctctgaatcattcagatgtccactggcaaacttcagacaggcctgtacatgtgctttcttgagcagggggaccttgcgggcactgcaggatttcagtccttcacggcgtagtgtgttaccaattgttttcttggtgactaatctcagctcgttacctgtataaaagacacctgggagccagaaatcttgctgattgataggggatcaaatacttatttccctcattaacatgcaagtcaatttataacttttttgaaatgcgtttttctggatttt

Function

NR:

description
transposase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198444 True 434 lncRNA 0.45 1 3184721 3185154

Neighbor

gene id symbol gene type direction distance location
AMCG00001410 NA coding upstream 262442 2921972 ~ 2922279 (+)
AMCG00001406 NA coding upstream 527719 2618236 ~ 2657002 (+)
AMCG00001403 tmem178,LOC107691291,LOC105026821,LOC107751123,LOC107570655,LOC106564792 coding upstream 791387 2380244 ~ 2393334 (+)
AMCG00001407 NA coding upstream 966218 2212251 ~ 2218503 (+)
AMCG00001400 NA coding upstream 1080176 2076753 ~ 2104545 (+)
AMCG00001415 NA coding downstream 234250 3419404 ~ 3420432 (+)
AMCG00001422 NA coding downstream 338184 3523338 ~ 3530730 (+)
AMCG00001420 egln1,LOC107737236,LOC107556149,LOC105893867,LOC107572057 coding downstream 361718 3546872 ~ 3554580 (+)
AMCG00001421 ero1b coding downstream 379366 3564520 ~ 3587440 (+)
AMCG00001439 NA coding downstream 423161 3608315 ~ 3648819 (+)
G157562 NA non-coding upstream 53005 3131223 ~ 3131716 (+)
G157559 NA non-coding upstream 63432 3120130 ~ 3121289 (+)
G157545 NA non-coding upstream 131278 3053168 ~ 3053443 (+)
G157530 NA non-coding upstream 330343 2829073 ~ 2854378 (+)
G157526 NA non-coding upstream 367798 2808377 ~ 2816923 (+)
G157579 NA non-coding downstream 2469 3187623 ~ 3189703 (+)
G157583 NA non-coding downstream 31923 3217077 ~ 3221250 (+)
G157584 NA non-coding downstream 40435 3225589 ~ 3275615 (+)
G157602 NA non-coding downstream 131332 3316486 ~ 3319933 (+)
G157632 NA non-coding downstream 209091 3394245 ~ 3401255 (+)
G157369 NA other upstream 1183793 1971881 ~ 2000928 (+)
AMCG00001392 NA other upstream 1489735 1691676 ~ 1694986 (+)
G157196 NA other upstream 2595421 587975 ~ 589300 (+)
AMCG00001436 gng4 other downstream 563400 3748554 ~ 3765362 (+)
G157781 NA other downstream 690055 3875209 ~ 3880779 (+)
AMCG00001433 NA other downstream 837643 4022797 ~ 4023910 (+)
AMCG00001430 srf other downstream 860202 4045356 ~ 4062333 (+)
AMCG00001457 NA other downstream 1438313 4623467 ~ 4652000 (+)

Expression


Co-expression Network