G157635


Basic Information

Item Value
gene id G157635
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 3405148 ~ 3406402 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU198512
aacaccCCACTCTGAGGGTCcgacgaggcacctcgtcccccaccatggaagtctgacgAGGCACAACCCTCCTCTGAGGCACCCCATCACGGAGGGCCAATGGgacatccacacccaaggtctgatgagccatcgccatccaaaggctgttgatggtccaacccccccacccccgatggccagcgagaggcctcctccagagggaagaccacagccagcagcactgatttaagaactttctgatctccttgctgctgtaacaactatactgcctggaggggaggcaaccattaggcctaggccctaagccatgGAACCCCagagattattttttctcctacatgctgtggaagaacaatcagtcttcaatcaggttggaacattcgttgcaatgcctttattacacgtgACGTGGAGAACAgaagtgaatcaagaagatcctaAAGCTGCTCTGCTTCCATGCTAAAAGCcagagctttttatacacagaaaacaaagatctgtTAATAAGATTACTATTAATAAGTCATGACTATGTTATCTTTAAAGcttgctaagcagaatatattattagaggACAGAGTCCATGGAACAATACAAGGATTAAGGAGCAGACACtgaaatcatactgtttgtcatctccaagatgctcatcgaaaataacaaacaggggtcaaactaccttctggcctggctGTTGACTTGACCTTAtatttcttaagtatacattaagtaaaccatttgtgaggggaatttctaactttacttccacaatgccatccataggatttttttgttattctctcATCCGTgcttaaatggtttatttaaatgttcacttactttatttaaGATCATGTGAAGTATTTACaggtctgtatttatttattttactttattgtattcatgtattttattttgctgtactttgttgtatgttttccagtctgtaaagcactctgtggctacctgTGAACGGCACTATTAGGGCTGgccgatatgacgatatatatcatatgacgatagaaaaacgtctatcgtttcatattatgctatatcgtttatatcgtagtgtcgcaaattgcaatctttacggcagtattttttgtcattaagacattttgcgttcttcccggttcttccacacgtgtcagaaatgtgcatcagaaacacagacagacatgaggagagagaactgacacacaataaccaacacaaccaagagatactttaatgtgCAAGCGCACACGCTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU198512 True 1255 lncRNA 0.42 1 3405148 3406402

Neighbor

gene id symbol gene type direction distance location
AMCG00001410 NA coding upstream 482869 2921972 ~ 2922279 (+)
AMCG00001406 NA coding upstream 748146 2618236 ~ 2657002 (+)
AMCG00001403 tmem178,LOC107691291,LOC105026821,LOC107751123,LOC107570655,LOC106564792 coding upstream 1011814 2380244 ~ 2393334 (+)
AMCG00001407 NA coding upstream 1186645 2212251 ~ 2218503 (+)
AMCG00001400 NA coding upstream 1300603 2076753 ~ 2104545 (+)
AMCG00001415 NA coding downstream 13002 3419404 ~ 3420432 (+)
AMCG00001422 NA coding downstream 116936 3523338 ~ 3530730 (+)
AMCG00001420 egln1,LOC107737236,LOC107556149,LOC105893867,LOC107572057 coding downstream 140470 3546872 ~ 3554580 (+)
AMCG00001421 ero1b coding downstream 158118 3564520 ~ 3587440 (+)
AMCG00001439 NA coding downstream 201913 3608315 ~ 3648819 (+)
G157632 NA non-coding upstream 3893 3394245 ~ 3401255 (+)
G157602 NA non-coding upstream 85215 3316486 ~ 3319933 (+)
G157584 NA non-coding upstream 129533 3225589 ~ 3275615 (+)
G157583 NA non-coding upstream 183898 3217077 ~ 3221250 (+)
G157579 NA non-coding upstream 215445 3187623 ~ 3189703 (+)
G157640 NA non-coding downstream 29943 3436345 ~ 3437663 (+)
G157668 NA non-coding downstream 82661 3489063 ~ 3493169 (+)
G157783 NA non-coding downstream 475440 3881842 ~ 3917073 (+)
G157834 NA non-coding downstream 660686 4067088 ~ 4067627 (+)
G157966 NA non-coding downstream 1290152 4696554 ~ 4702861 (+)
G157369 NA other upstream 1404220 1971881 ~ 2000928 (+)
AMCG00001392 NA other upstream 1710162 1691676 ~ 1694986 (+)
G157196 NA other upstream 2815848 587975 ~ 589300 (+)
AMCG00001436 gng4 other downstream 342152 3748554 ~ 3765362 (+)
G157781 NA other downstream 468807 3875209 ~ 3880779 (+)
AMCG00001433 NA other downstream 616395 4022797 ~ 4023910 (+)
AMCG00001430 srf other downstream 638954 4045356 ~ 4062333 (+)
AMCG00001457 NA other downstream 1217065 4623467 ~ 4652000 (+)

Expression


Co-expression Network