G157975


Basic Information

Item Value
gene id G157975
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 4713895 ~ 4714160 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU198925
tttatttcaaatatgtgcCTTTCGGCGAATTTATTTGCATAgtttatttgttcatatttatcAGCATTATCAACAGCCATAGGCAAATTGTCCTTGCAGGGTGGCACGTTGGCCTCAGTGGGCGGCACGTTGGCCTGAGGGGGCGGCACATTGGCCTGAAGGGGCGGCATGTTGGCCTCAGGGGGCGGCACATTGGCCTGAGCGGGCGGCACGTTGGCCTGAGCGGGTGGCACGTTGGCCTCGTTCGACAGGTCTGTAGGGGCATC

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU198925 True 266 lncRNA 0.56 1 4713895 4714160

Neighbor

gene id symbol gene type direction distance location
AMCG00001452 NA coding upstream 194767 4518304 ~ 4519128 (+)
AMCG00001453 NA coding upstream 195982 4512184 ~ 4517913 (+)
AMCG00001450 NA coding upstream 203039 4500349 ~ 4510856 (+)
AMCG00001451 rcor3,LOC106585063,LOC106564802 coding upstream 218044 4489453 ~ 4495851 (+)
AMCG00001445 NA coding upstream 397946 4313938 ~ 4315949 (+)
AMCG00001463 NA coding downstream 56457 4770617 ~ 4779786 (+)
AMCG00001461 NA coding downstream 88012 4802172 ~ 4866884 (+)
AMCG00001462 NA coding downstream 154919 4869079 ~ 4870742 (+)
AMCG00001459 NA coding downstream 161988 4876148 ~ 4885603 (+)
AMCG00001460 NA coding downstream 200691 4914851 ~ 4939823 (+)
G157966 NA non-coding upstream 11034 4696554 ~ 4702861 (+)
G157834 NA non-coding upstream 646268 4067088 ~ 4067627 (+)
G157783 NA non-coding upstream 796822 3881842 ~ 3917073 (+)
G157668 NA non-coding upstream 1220726 3489063 ~ 3493169 (+)
G157640 NA non-coding upstream 1276232 3436345 ~ 3437663 (+)
G157985 NA non-coding downstream 158535 4872695 ~ 4875144 (+)
G158014 NA non-coding downstream 173954 4888114 ~ 4888352 (+)
G158089 NA non-coding downstream 598908 5313068 ~ 5315236 (+)
G158104 NA non-coding downstream 707311 5421471 ~ 5423092 (+)
G158184 NA non-coding downstream 993932 5708092 ~ 5734559 (+)
AMCG00001457 NA other upstream 61895 4623467 ~ 4652000 (+)
AMCG00001430 srf other upstream 651562 4045356 ~ 4062333 (+)
AMCG00001433 NA other upstream 689985 4022797 ~ 4023910 (+)
G157781 NA other upstream 833116 3875209 ~ 3880779 (+)
AMCG00001436 gng4 other upstream 948533 3748554 ~ 3765362 (+)
AMCG00001480 NA other downstream 651845 5366005 ~ 5383064 (+)
AMCG00001486 NA other downstream 879520 5593680 ~ 5633349 (+)
AMCG00001489 NA other downstream 1155815 5869975 ~ 5871430 (+)
AMCG00001493 NA other downstream 1175676 5889836 ~ 5900998 (+)
AMCG00001509 sf3b5 other downstream 1679943 6394103 ~ 6395960 (+)

Expression


Co-expression Network