AMCG00002147 (LOC106565894,LOC106582986)


Basic Information

Item Value
gene id AMCG00002147
gene name LOC106565894,LOC106582986
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5034310 ~ 5036785 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002147
tGTCTCCCGTTGCAGGTCATCAACGCCATCGAGCAGGACTATCGGTTGCCCCCGCCGATGGATTGCCCCAGCGCCCTGCACCAACTCATGCTGGACTGCTGGCAGAAAGACCGCAACAACCGGCCTAAGTTCAGCCAGATTGTCAACACCCTGGACAAGATGATCCGCAACCCCAACAGCTTGAAGGCCATGACCCCGCTATCATCAGGGGTACACCTCCCCCTTCTGGACCGCAGTGTGCCCGACTTCTCGAGCTTCAATACTGTGGATGAGTGGCTGGACGCAATCAAGATGGGGCAGTACAAGGAGAACTTTGCCAACGCCGATTTCACAAGCTTCGATGTGGTCTCCCAAATGACTATGGAGTAA

Function

NR:

description
PREDICTED: ephrin type-B receptor 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002147 True 369 mRNA 0.56 2 5034310 5036785

Neighbor

gene id symbol gene type direction distance location
AMCG00002148 ephb2,LOC104917933,LOC108439490,LOC102781222 coding upstream 11626 5014750 ~ 5022684 (+)
AMCG00002146 ephb2 coding upstream 33802 4997545 ~ 5000508 (+)
AMCG00002145 LOC102295218,LOC102203423,LOC101487531,LOC102781222 coding upstream 66590 4963054 ~ 4967720 (+)
AMCG00002143 NA coding upstream 242642 4788512 ~ 4791668 (+)
AMCG00002140 LOC107727752 coding upstream 312379 4690966 ~ 4721931 (+)
AMCG00002149 lrrc38,LOC107685631,LOC106582984 coding downstream 48110 5084895 ~ 5089872 (+)
AMCG00002150 vps13d coding downstream 91274 5128059 ~ 5196093 (+)
AMCG00002151 NA coding downstream 201526 5238311 ~ 5240700 (+)
AMCG00002159 NA coding downstream 733467 5770252 ~ 5776525 (+)
AMCG00002156 rcc2,LOC107687402,LOC107712686 coding downstream 824653 5861438 ~ 5872711 (+)
G121114 NA non-coding upstream 281976 4749128 ~ 4752334 (+)
G121045 NA non-coding upstream 452030 4581973 ~ 4582280 (+)
G121044 NA non-coding upstream 452431 4580854 ~ 4581879 (+)
G120974 NA non-coding upstream 946838 4087159 ~ 4087472 (+)
G120961 NA non-coding upstream 1093594 3940456 ~ 3940716 (+)
G121176 NA non-coding downstream 164617 5201402 ~ 5202462 (+)
G121178 dhrs3 non-coding downstream 166064 5202849 ~ 5204614 (+)
G121187 NA non-coding downstream 190889 5227674 ~ 5228099 (+)
G121198 NA non-coding downstream 206924 5243709 ~ 5275923 (+)
G121228 NA non-coding downstream 437351 5474136 ~ 5570247 (+)
AMCG00002098 NA other upstream 1492133 3533814 ~ 3542177 (+)
G120742 NA other upstream 2074835 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 2180183 2852154 ~ 2854127 (+)
G120518 NA other upstream 3093494 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 4041546 682670 ~ 992764 (+)
AMCG00002152 NA other downstream 182045 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 1549869 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 2357015 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 3701986 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 4807420 9844205 ~ 9851312 (+)

Expression


Co-expression Network