AMCG00002149 (lrrc38,LOC107685631,LOC106582984)


Basic Information

Item Value
gene id AMCG00002149
gene name lrrc38,LOC107685631,LOC106582984
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5084895 ~ 5089872 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002149
ATGTTGCCATGTTGCCGCTGGCTTCAGCAGCTCGTCGCCTTGCTCTCCTCTGCCTTACTGACTTGGGGGCAAAACTGCCCAGCTAACTGCCTGTGCCCGGACCCCCACACAGTCGACTGCAGCGGACGGGGGTTGACTCGCTTGCCGGACTCCATCCCCCTGGACGTGCGGAGACTCCTGCTGTCGGACAACTGGATTCCCCGGATCCCGTCGGATTTCCTCGTGCTCTACAGCGACCTGGTCTACCTGGACCTGCGGAACAACTCCCTCTCCTGCATCGAGCCCGGGACGCTCAGCACCTCGTCCAGGCTGGTGTTCCTGGACCTGGGCTGCAACAACCTGACGGAGATCCCCTCGGGGACCTTCGGGGAGTCGCGCAGCCTCATCAAGTTGCGCCTGGGCAACAATCCGTACCTGGCCAAGGTCAGCGAGAACGCCTTCCAGGGGCTGACCTCCCTGCgcgagctggagctggagcgcAATGCGCTGTCCGGCCTGCAGGTGGGGGCCCTGAATCAACTGCCCTCCCTGCGGGTGGTGAGGCTCGAGGGAAACCCTTGGGTGTGCAACTGCAGCTTTGCCAACCTGTTTGCATGGCTGAGGAAAAACTCGGACAAGCTTCCAACCGCGGCACCAACATCATGTGAGCAGCGCTCGGTGCAAACCTGA

Function

symbol description
lrrc38 Enables potassium channel activator activity and transmembrane transporter binding activity. Involved in positive regulation of voltage-gated potassium channel activity and potassium ion transmembrane transport. Part of voltage-gated potassium channel complex.

NR:

description
PREDICTED: leucine-rich repeat-containing protein 38-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002149 True 669 mRNA 0.63 2 5084895 5089872

Neighbor

gene id symbol gene type direction distance location
AMCG00002147 LOC106565894,LOC106582986 coding upstream 48110 5034310 ~ 5036785 (+)
AMCG00002148 ephb2,LOC104917933,LOC108439490,LOC102781222 coding upstream 62211 5014750 ~ 5022684 (+)
AMCG00002146 ephb2 coding upstream 84387 4997545 ~ 5000508 (+)
AMCG00002145 LOC102295218,LOC102203423,LOC101487531,LOC102781222 coding upstream 117175 4963054 ~ 4967720 (+)
AMCG00002143 NA coding upstream 293227 4788512 ~ 4791668 (+)
AMCG00002150 vps13d coding downstream 38187 5128059 ~ 5196093 (+)
AMCG00002151 NA coding downstream 148439 5238311 ~ 5240700 (+)
AMCG00002159 NA coding downstream 680380 5770252 ~ 5776525 (+)
AMCG00002156 rcc2,LOC107687402,LOC107712686 coding downstream 771566 5861438 ~ 5872711 (+)
AMCG00002161 NA coding downstream 824399 5914271 ~ 5916094 (+)
G121114 NA non-coding upstream 332561 4749128 ~ 4752334 (+)
G121045 NA non-coding upstream 502615 4581973 ~ 4582280 (+)
G121044 NA non-coding upstream 503016 4580854 ~ 4581879 (+)
G120974 NA non-coding upstream 997423 4087159 ~ 4087472 (+)
G120961 NA non-coding upstream 1144179 3940456 ~ 3940716 (+)
G121176 NA non-coding downstream 111530 5201402 ~ 5202462 (+)
G121178 dhrs3 non-coding downstream 112977 5202849 ~ 5204614 (+)
G121187 NA non-coding downstream 137802 5227674 ~ 5228099 (+)
G121198 NA non-coding downstream 153837 5243709 ~ 5275923 (+)
G121228 NA non-coding downstream 384264 5474136 ~ 5570247 (+)
AMCG00002098 NA other upstream 1542718 3533814 ~ 3542177 (+)
G120742 NA other upstream 2125420 2956908 ~ 2959475 (+)
AMCG00002076 NA other upstream 2230768 2852154 ~ 2854127 (+)
G120518 NA other upstream 3144079 1924022 ~ 1940816 (+)
AMCG00002019 NA other upstream 4092131 682670 ~ 992764 (+)
AMCG00002152 NA other downstream 128958 5218830 ~ 5226656 (+)
AMCG00002190 acot7 other downstream 1496782 6586654 ~ 6602608 (+)
AMCG00002215 NA other downstream 2303928 7393800 ~ 7411230 (+)
AMCG00002245 NA other downstream 3648899 8738771 ~ 8792478 (+)
AMCG00002272 NA other downstream 4754333 9844205 ~ 9851312 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_04789240_04793134 LRRC38, LRRC38A coding CI01000306 null 4788170 ~ 4794154 (+)