AMCG00002225


Basic Information

Item Value
gene id AMCG00002225
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7846338 ~ 7856519 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002225
GATGTTTTGTGATTTCCACCAGACCTCTACTGCCCCCTCTGTGTGCTATGAGTTCCTCAGATCATGAAGAGAAGACCCCTGTACAATGTCACTGGacattaaaaccacacattGGACTGTAAAGGCAATACTGTTCCTGCTCTTTCTATGTAGGCTGTGCAGTGGGTGTGGCCGTGCAGAATACAATATAAACGGAGAGTGCTGTCCTATGTGCTCCGCAGGAAATCGGGTTTATCGTCACTGTACAGACTACTCCAGCACCTCCTGTATACCGTGTGTTGATGAGACCTTCACAGACCAGCCTAATGGATTAGATAAATGCCGTCCATGCAGTATCTGTGATGCAGGACTGGGTGTAGAGACTCTGAGGCGCTGTACGTCCTCCTCAGACGCAGTGTGTACTTGTATGAAGGGACATTACTGTGAGGAGCCAAATAAAGACGGTTGTAAACTGTGTCAGAAACACAGNNNNNNNNNNCCTGGACAGTTTATCAAACAGAAGGGATCATATTGGACTGACACATTGTGTGAGGGCTGCCCCACCAACACATTTTCAGACGGCTTTTTTAATTCATGTCAACGCCACACAGACTGTGAATTACTTGGGCAAAAAACAAGGAGACGTGGAAGCCCTTCATCTGACGCTGAGTGTGAAGAGAAACCTGACCATACTGCTCTGATAACTGGCACCTCAGTGCCGCTAGTGGTTCTTCTAGTAATAGCAGGAATAGTGGCATTcctatacaaaaagaaaattctGCACTGTATGAAAAgtgaaatgaaaaatacccagGAAACACCGACATGTGTTGCCTTAATGTCCACAGAGAGTCATTCAGGAGATGGAACCTGCACCAGCCCGCCCCCCAACACAGCTCACCATCAAAGACGACATGAGGTCGTACATCCCCTGACAGCTACCTGAGGAGCTGCGAATCATCAGCCGATGTATCTATCCCAATGTGAGATCCACTAATGAGTAACATACCACAAGGGCCCAGACCATGTCCCACAGCTGGAAGTAAGACAATCAGTGGAATATCTAAGTGACTGAGCCTCCTTAACTGCACAATCATCTTTCGGATTGATATTTGAAAGGTCACAGGGACCTGGCATCACCAGACCATCATTCCTCTCTGTGCGAACACACTCCTTGAGTCCCTGCCTGCATCCTTAAACAAGCTCCTGACTAGGATGGCCAACCTATTAGGAAAACTGATGAGTATCtgaacattcaatatttgttattCTGAACTTGAGAAATGATAAATGAGTAAGTGTTGCTGATATTGGTGAGGGTGGATTTGGTTCCTATGAGTAGCAGTTCTGACCTCGACCCTCGGGCTGTGCCAAGATACAGAGCCATAGAGGGCCCAGGTGTTCCTGGCCCCAGAGCCCAGGAGTGAAGAACCTGAGTGTCCAGTGCCCAAGAGGGATGAGCCCCTGTCCAGAGCCCTGGAGAGCAGAGCCCAAGCTTCCTGAAGATGAGGGAGAGGTACTCCCTTCCTTGTCGCACTCCAAGGATGAGTGTCCACCACCATAAATGCAGAAGAGAGTCTGCCCCTGAGCTCTGAGGAGCTTCAAGACTTCAGGAGAGAGTCGCCACAAACTGACCTGCTGAGACAGATTTGGGAAGCTGCAGGGCTGTCTTTAGCAAGGATGCTGAGTGATACAGGACTGGACATGGCACCTCTCAGAGGAATAACTCTCCTGGATGACTGGATTGTacctaaaaatatgaattatgaacTAGGTTGAAAGTTCTGTCAAATTGGCCACTGCCTACTGGAACCAGTTGAAACCCATATTTTACTTCAGATTGTTTTTCTATATTCCAAAACTGATATGCAATTATGAATTTCagatatatagaatatatttcTGTACTTTAATGATTATCATTAACATGATTAACATATAAActatacataaaaaacagaataatgcttttaactgcagtttattgattttattgaatttaaaattcaaatacatttaatacatgaCATGTCAAGTGTAATTTTAATGATCTCCAAACTCTGATTAAGTAAATCTCTGTTCATCTTTAACTGTcagtgttatgtttttttctcaagCAGTGTGATTTTCTGAATCTGAAGAACTGCAATTTTTTAACTGTTCATAGTGATGTGGAAGGttcactgcactgtggtgcGGGAGACCAGGGTTTGAGAttcgctgtgtgtgtgttttatgttaatggaatgctttttttgttttgtttttaactatgAAGGATCATATTTGAGGTACACAGTGTGTGAACACTGCCCTgccaacacattttcagattggCACTGCCCTGCCAAATTATTTTATGGCAATGTCACACACAATAGGTTTCCTTTTACTCTTGCTTTTTTATTGAGGGCGAGAAGAATATTACTTGTAtgagttgtatgtgtgtgtgaaaagatTCATGTagtatatgatatgatattattattattattattattattattatatttttgtatgcagttttatgcattttctaTATCAGCctcttattttaaagttgtgAATTATTGGGGCAAATAACAAAGAAGAGTGGAACCGCTCCATCTGATGCCGAGTATGAAGAGAAACCTCCATCTATTGGTCTGATAGTTGGCATCACAGTGATTCTAGCAGGAGGAATAGCAGTATCTGTCctatacagattttaaaagctgCCCTGTATGAAAGGTATGATTTGATCagtgaatttgtatttgtactgtataCTATGTTATTAAAGTATTGATATTCTTAATTGCATATTACATATGGTAATTAATCAagcaatgtattaatgtaatgtgttttcgCATCTGTGGCttgaaagtatatttaataatgaagcacaatgttaaaataaatagctgTCCAACAATGACAATATCTGAAATGCATCAACGTTGAAGACTATGAAATGGGCTTGATTCTCAGAAGAGTGTAAAAATcaagtttatatattaaaacaatattatataaacaaaccCTTTATTAAAGCTGAATAAGCACggaaaaatattttagaagCATTAATTGCAAATATACCCCGTGTGCTTTGagtattttat

Function

GO: NA

KEGG:

id description
K05152 TNFRSF14, HVEM, CD270; tumor necrosis factor receptor superfamily member 14

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002225 True 3086 mRNA 0.40 9 7846338 7856519

Neighbor

gene id symbol gene type direction distance location
AMCG00002222 NA coding downstream 19781 7820512 ~ 7826557 (-)
AMCG00002220 prkcz coding downstream 45835 7796723 ~ 7800503 (-)
AMCG00002221 prkcz,LOC106572815 coding downstream 126937 7691960 ~ 7719401 (-)
AMCG00002218 ski,LOC106572818 coding downstream 198709 7646655 ~ 7647629 (-)
AMCG00002219 ski coding downstream 264240 7565399 ~ 7582098 (-)
AMCG00002230 NA coding upstream 14375 7870894 ~ 7871496 (-)
AMCG00002228 NA coding upstream 31793 7888312 ~ 7901666 (-)
AMCG00002229 NA coding upstream 50516 7907035 ~ 7907578 (-)
AMCG00002227 mad2l2 coding upstream 81941 7938460 ~ 7945017 (-)
AMCG00002226 NA coding upstream 113384 7969903 ~ 7979082 (-)
G121754 NA non-coding downstream 1022 7830193 ~ 7845316 (-)
G121718 NA non-coding downstream 182661 7662986 ~ 7663677 (-)
G121716 NA non-coding downstream 187487 7657832 ~ 7658851 (-)
G121689 NA non-coding downstream 283591 7561077 ~ 7562747 (-)
G121447 NA non-coding downstream 1422040 6420041 ~ 6424298 (-)
G121789 NA non-coding upstream 159545 8016064 ~ 8017075 (-)
G121875 NA non-coding upstream 968912 8825431 ~ 8859003 (-)
G121885 NA non-coding upstream 1012126 8868645 ~ 8870698 (-)
G121912 NA non-coding upstream 1075644 8932163 ~ 8933163 (-)
G121935 NA non-coding upstream 1161607 9018126 ~ 9018327 (-)
AMCG00002223 NA other downstream 6927 7826641 ~ 7839411 (-)
AMCG00002167 NA other downstream 1830945 5975725 ~ 6015393 (-)
G120993 NA other downstream 3626461 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 4059794 3784236 ~ 3786544 (-)
G120907 NA other downstream 4130086 3713867 ~ 3716252 (-)
AMCG00002265 NA other upstream 1752231 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 1900906 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 1974000 9830519 ~ 9833224 (-)
AMCG00002279 NA other upstream 1980399 9836918 ~ 9853075 (-)
AMCG00002288 NA other upstream 2413370 10269889 ~ 10279984 (-)

Expression


Co-expression Network