AMCG00002570 (LOC103388314,LOC102783449,LOC100707272,LOC101473954,LOC103366223)


Basic Information

Item Value
gene id AMCG00002570
gene name LOC103388314,LOC102783449,LOC100707272,LOC101473954,LOC103366223
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 19838384 ~ 19843617 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002570
GCAAACCACATGCTCCAAACTAGGAGGGGCTTGCAGCTCAAGTGGGATGCCAATCAAAGCATCAACTTCAAATTGTATCTGAGAGATCAGCCCAAGACCTAGGGGCAGACACATCAGTTGGAGCTCAATTGTTGATCTGATCACATCCAAGGGACTTGCTGCCAAAGACACAAGCCGAGATTGGAGAAGAGCAGAgtctattttttccccctgctttTGTGCTTGAGCACTTCCAGCTTgattttttggtgtgtgtgtgtgtatcctgTTTTTTGCTGTGACTTTGCTTCAGATCTGGTCGAGGAGATGTCTTTTCCCCAGCTGGGCTATCCTCAGTATTTAAGTGCCACCCAAGCGGTGTATGGAGGCGATCGGCCGGGAGTTCTGGCTGCCTCTGCCCGGGGAGGGAGCTCTGAAATCGGCGCCAATCCGTCCGCCACCGCGGCGGCAGTCACCTCGGTGTTGGGCATGTACGCAAACCCTTACGCAGCCCACAACTACAGCGCTTTCCTGCCTTACACCAGTGCGGACCTGGCTCTCTTCTCTCAAATGGGTTCCCAATATGAGCTGAAAGATAACCCAGAGGACGAGGATGGCAACATCTTCGGCAGCGACAACGAAGGCGACGCGGAGAAGAACGAAGACGACGAGGAGATCGACCTGGAGAGCATTGACATCGACAAGATCGACGAGAACGACGGCGACCAGAGCAacgaggaggacgaggagaAGCTGGACGCCCGGGACAGGGGGGACCTGGACAGTTTGGAGAAGAGACGCGCACTGAGCCTCCAGGCGCACGAAGGCTTTGACAAGTCCAAAGACGCCATCTCTGCAGCGAAAGACCCGTCTGAGAGCAATAACACCAGGGTGCTTTCTCCTGGCGGGCAGGGCCATTTCCAAGTGCCAGCAAACAATAAGCCCAAGATCTGGTCCTTAGCAGAGACAGCCACCAGCCCCGACAGCTCTCAGAAACCCACCTCGCCCTCTGCCCCCGCCAGCCACACGTCCCCCCAGATCCAGCACCCAGCTTTCCTCCCCAGCCACGGACTGTACACTTGCCAGATTGGGAAGTTCCACAATTGGACCAATGGCGCTTTCCTGAGCCAAAACTCCCTGTTAAACGTGAGGTCTTTTTTGGGAGTAAATCAGCATCACCATCATCACAATCATGCCCTCCATGCCCAGCAGCAGACATCTGGGGTCGTATCATCCGTCGCAGCACTGAACAGTGAGAAATCTCCAGAGAGCCTCAGTCCTAAACACATAGATCGGGAAAACGTTCAGAGGACCGAGTCTCCAACACAACCAATCAAATCATCGTTTCAACAAGTACACGACAGTCCCAGGAATCAACCAGAGGCAACACAGCGAGTTTTAACAGCTCTTTCTTCGGCCTGATCAAGATTATTTTGTCGGAAAAAggactgacaaaaaaaacaaaaaacaaaaaaaaacttaaaggacaaaatgaaacaaacaaacacaattccTCCTCCATGTAGCATTCAGCCGATGCAGAACAATTGAGTCGATTTGATCAAACTTGTGGATGGATTTTCCTTATTATTGTACCATTATCACATcctgtgttatatatatatttttttttcttgaacatcttgtattttgtctttcctgtgtttgtgcttttctttctgtaaatAGAGTGACCCTAAAATTGTAAATAGCGCGTCGACAGAATTTGtctaaatcatatatttttgtct

Function

NR:

description
PREDICTED: iroquois-class homeodomain protein irx-1-like

GO:

id name namespace
GO:0042462 eye photoreceptor cell development biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002570 True 1730 mRNA 0.50 5 19838384 19843617

Neighbor

gene id symbol gene type direction distance location
AMCG00002569 NA coding downstream 294579 19522852 ~ 19543805 (-)
AMCG00002568 NA coding downstream 345113 19481866 ~ 19493271 (-)
AMCG00002566 ube2ql1,LOC107711339,LOC107691500,LOC107754840 coding downstream 434761 19394342 ~ 19403623 (-)
AMCG00002567 NA coding downstream 472140 19362335 ~ 19366244 (-)
AMCG00002563 papd7,LOC107691498,LOC107694334 coding downstream 486611 19333911 ~ 19351773 (-)
AMCG00002579 NA coding upstream 425943 20269560 ~ 20274450 (-)
AMCG00002580 LOC108434887,LOC108272386,LOC108232307,LOC106521611 coding upstream 515940 20359557 ~ 20365199 (-)
AMCG00002578 NA coding upstream 661977 20505594 ~ 20512929 (-)
AMCG00002583 LOC107711341,LOC107691508 coding upstream 1283497 21127114 ~ 21128253 (-)
AMCG00002586 NA coding upstream 1512315 21355932 ~ 21360543 (-)
G124068 NA non-coding downstream 554091 19283878 ~ 19284293 (-)
G123981 NA non-coding downstream 1056018 18782145 ~ 18782366 (-)
G123961 NA non-coding downstream 1252454 18584709 ~ 18585930 (-)
G123926 NA non-coding downstream 1368777 18469234 ~ 18469607 (-)
G123876 NA non-coding downstream 1632252 18205668 ~ 18206132 (-)
G124175 NA non-coding upstream 458455 20302072 ~ 20334454 (-)
G124222 NA non-coding upstream 696690 20540307 ~ 20540523 (-)
G124327 NA non-coding upstream 1135480 20979097 ~ 21116735 (-)
G124402 NA non-coding upstream 1951156 21794773 ~ 21794988 (-)
G124429 NA non-coding upstream 2075083 21918700 ~ 21918915 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 1796811 17933464 ~ 18041573 (-)
G123829 NA other downstream 1848919 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 2132095 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 2864083 16958162 ~ 16974301 (-)
G123585 NA other downstream 2998662 16836156 ~ 16839722 (-)
AMCG00002584 NA other upstream 1803438 21647055 ~ 21678545 (-)
AMCG00002596 NA other upstream 2057675 21901292 ~ 21902597 (-)
G124719 NA other upstream 3242377 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 3338304 23181921 ~ 23192656 (-)
G124829 NA other upstream 4417948 24261565 ~ 24261823 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000111_02207932_02211752 IRX1, IRX1A coding CI01000111 null 2207132 ~ 2212026 (+)