G120754


Basic Information

Item Value
gene id G120754
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3008901 ~ 3020156 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU151314
GCACACATGTATATGGCTGTATGACAGTGCGCAGCCTGTGACTCCCACTCCAGGCCCCAGCAGACATGTCACTTCCTCCCCCACGCCTGTGACACCGCCGCCGCAGACAGAGCGTGAGTGAGGGAGCGTGCGTTTCTGCCGCAAGACACCCTGGCGCGTCAGCAGAGCCAGGAGGCTGGCGGTGGATCACGTCACGTCAGCCAGCCGGAGGCCCGCTGCAGCCCGGCCAGAATGGCGCCGCTGCAACCCAACGGGCCCGAGAGAGAGGGACCGCAGTGCTGGGAGAGTTGACAGATACATCCATGAAATGATGAAGAGTCCCTCTGAGGTCCCACCCCCGCGCCTGGAGCTTGTGTGAGCAAACATCGTGCATGTGACTGGTGCTGCCCAGCCACCTGTGAGAGGGGTGATGTGTTGCAGGTGGACGCAGTGGACGGGTGAGGTCAGGGTGGATGTCTTTGCCAGGGTCCCTGCAGAGGAGGAGCCTGGGGGGGGCGTGCATTGCTGTTGtcaataaagtaataaaataaacgtgTG

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU151314 True 537 lncRNA 0.61 3 3008901 3020156

Neighbor

gene id symbol gene type direction distance location
AMCG00002083 NA coding downstream 47643 2956881 ~ 2961258 (-)
AMCG00002084 NA coding downstream 62748 2935521 ~ 2946153 (-)
AMCG00002077 utp3,LOC102785935 coding downstream 136628 2861912 ~ 2872273 (-)
AMCG00002079 NA coding downstream 151774 2856058 ~ 2857127 (-)
AMCG00002072 foxj3,LOC103362994,LOC101077580 coding downstream 281633 2701238 ~ 2727268 (-)
AMCG00002089 NA coding upstream 23492 3043648 ~ 3066913 (-)
AMCG00002090 NA coding upstream 67388 3087544 ~ 3089884 (-)
AMCG00002092 NA coding upstream 75564 3095720 ~ 3110908 (-)
AMCG00002093 LOC106567259 coding upstream 113952 3134108 ~ 3146480 (-)
AMCG00002095 NA coding upstream 126448 3146604 ~ 3147047 (-)
G120746 NA non-coding downstream 22122 2985573 ~ 2986779 (-)
G120743 NA non-coding downstream 55419 2953273 ~ 2953482 (-)
G120683 NA non-coding downstream 312514 2695581 ~ 2696387 (-)
G120601 NA non-coding downstream 784496 2223343 ~ 2224405 (-)
G120589 NA non-coding downstream 846045 2162641 ~ 2162856 (-)
G120760 NA non-coding upstream 20392 3040548 ~ 3042500 (-)
G120789 NA non-coding upstream 71620 3091776 ~ 3092899 (-)
G120841 NA non-coding upstream 472800 3492956 ~ 3494050 (-)
G120842 NA non-coding upstream 480125 3500281 ~ 3502928 (-)
G120849 NA non-coding upstream 515666 3535822 ~ 3536525 (-)
G120748 NA other downstream 3984 2995508 ~ 3004917 (-)
AMCG00002085 NA other downstream 77883 2921252 ~ 2931018 (-)
AMCG00002078 NA other downstream 160964 2845382 ~ 2847937 (-)
AMCG00002044 NA other downstream 1518334 1486551 ~ 1490567 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 93286 3113442 ~ 3128440 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other upstream 153349 3173505 ~ 3186353 (-)
AMCG00002097 NA other upstream 387329 3407485 ~ 3466461 (-)
G120907 NA other upstream 693711 3713867 ~ 3716252 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other upstream 764080 3784236 ~ 3786544 (-)

Expression


Co-expression Network