AMCG00002092


Basic Information

Item Value
gene id AMCG00002092
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3095720 ~ 3110908 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002092
ATGTCGCCGTCGAGCCCAGAGACGGGAAGCGCCGGGCCGCACGACGAGCGCACCTTTGCGGCTGTGAGACCTTTGTGTGACCGCCGGACACAACCCGGGCTGTGGATGCCGCACTGCCGTCGGTGAAGTGACTTTGTGAGCGAGCAGTCGCGGGGGCAGGAGTGGACTGGACGCGTTGCATTACGTCACTGCGGCCGGACCCGGTTGTGTGATCGGCGGGCAGGTGAGATTTTCTGTCTCCGTGGAGCGTAAAGTACCCTCCTGAGGGTGCCATTTGAACATCCCCGGTACGATGCCTCACAGACCATGACCACAGCGGACCACAGCGCACTGTCTCGTGATGTCACACATCCTGCACCCAGCCTGttagaaagcaaacaaaacaacaacttcaaGCACAAAAAACTTACCTTTTTTTaagatctatatatttttacctGTCCGCAATGGCCGCAGTCTCTTTGATAGACGTGGGCCCTCTGTTCCAGGAACGCTGCTGAGCTTGGGTCTTGTGGAGACATAGGCCTTCATCCTTACAGGAGCAGGTCTCAGCCCAGGAGCATAGTTTGGGTTTTAAAAAGCTTGGCTGTATTCAACTCTCTCCAGTCCCAGTGCAGTTGGGCGGCCATGCCGGGCATCAGCACGTTCCCCGGTGCGGAGGAGGAAGGCGCGTCGTCCTCGGGGGTCCAGGACGAAGGGGGCCAGTCAGCCGCACAGAAGCCCACACAGGAGCCTCGGGAGGTGGTGGCTTTACCAGGGGTggacgaggaagaggaggaggaggcggtggAGGAAGGAGCCGGGGCGCGGGGGGGCGCCGGGGGCTCGTCAGTGGGGGAGCAGGGCCAGGAGGACGTGGACATGAATAGCAACCACGGCTCGAGCAGCGGCACCGACTCGGTCAACCGGGGCTCCCGCGGCACCGGCAGCACCAAGAGcTCCAAGTCCCTGGCCACCTCGTCCTCCTCTCACAGCTCGAACTCCTACAGCCTGCACAGCGCCCGCTCCGGCCAGGACACGCACACCACCGAGGGCAGTGACGATCCGGAGCGGGGGCGGAACCAGATGCACCGGAAGCTGATGCAGACGGTGCAGGAGATGAAGAAGAGGCTGCCCTCGGAGAAGCGCGGTCACAGCAAGGCCAGCACCGTGGAGGCCCTCAACTATGCCCTGAACTGCGTCAAACAAGTGCAGGCCAACACTGCGTACTACAAGCTACTGATGAGCAACGGCCTGGCTGCACGCCCCGACGCCACGGCCTACACCCTGGAGCAGCTGGAGTCCATCACCTCGGAGCACACCCTCAAGAACACGGACACCTTTGTGGTGGTGTTCTCCCTGGCCAGCGGCCGGGTCCTGTACATCTCCGAGCAGGCCTCCAGCATCCTCAACTgcaagaggaagttcctgtacTCGGTGAAGTTCGTGGAGCTGGTCTACAACCAGGACGTCAATATCTTCTACTCCCACACCGCCCAGCCTCACCTGCCCCCCTGGAACGTGGACTCCAGTAGCGCGGCTATGCTGTTCCAGTCTGCCCAGGTCAAGTCCTTCTTCTGCAGATTCAGgggaggaAAGGACCGAGAGGGAGAGATGCGCTATAACCCTTTCCGCCTCACGCCGTACCTGCTGAGGGTGAACGAGCCGGGCATCGGCGAGAGGCAGCCCTGCTGTTTGGCGCTGGCCGAGAGGATCCACTCGGGCTACGAAGCTGCGTGTTCATGGAGTGCGGTGCCCTTGCTGGGATACCTCCCACAGGACCTAATTGGCACCTCGGCGCTGACGTGCCTGCACCCCGAGGACCGCCCTCTGATGCTCGCCATGCACCGCAAgaTCCTGAAGTACGCGGGCCAGCCCCCCTTCGACCACTCTCCGGTCCGGTTCCGCTGTCAGAACGGGGACTACGTGACCCTGGACACCAGCTGGTGCAGCTTCATCAACCCCTGGAGCCGCAAAGTGGCCTTCATCATCGGCAGACACAAAGTCCGCGCGGGGCCGCTAAACGAGGACGTGTTCGCACCCCGGAGCAAAGCCGAGCCGACGGTCGTGGACGAGGAGATCAAAGAGCTCCAGGCGCAGATCTATAAGCTCTTCCTGCAGCCGGTACATAACAACGGCTCCAGTGGCTATGGCAGTCTAGGCAGCAACGGCTCCCATGAGCACTACATCAGCGTGGCCTCGTCCAGCGACAGCAACGGCAACATCTGGGAGGACAGCCACCGCGAGCCGATGACCCTGCAGCAGATCTGCGCTGACGTGAACAAGCTGAAGAGCTGGGGGCAGCAGGCCTACCTGGACTCCCGCAGCAAACCTGTGCCCCTGGGCAGCACCGCCCCAGATAGACCAAGCGTTTCGCTGCCACATCCCTCGGGGGCGccggaggtcagaggtcacctCCCCGCTGCCCATGGCGACTCCAGGAAGCAGACGCACATTCCGTCCTACCAGCAGATCAACTGTGTGGACAGCATCATCAGGTACCTGGAGAGCTGCAGCGTCCCGGCCCTGAAGCGCAAGTGCGAGTCCCTGTCCAACACCACGTCCTCCGAGCCGGCCGacccgccccgccccgccccacCCGGCTCGGCTGCGGCGCCGGAGGAGTTCCGCCGGGTGGGTCTGACCAAACAGGTGCTGTCGGCGCACACGCAGAAGGAGGAGCAGGACTACGTGGACCGCTTCCGCCACCGCATCCTGCAGAGTCCATACAGCTCCTACCTGCAGCAGGACGGCAGCAGCAAGGCACCCTCGCACCCCCACGGCGACTGCGCCATGCGGTCCGGCAGCGCGGCGGGCTGGAGGAAGTCCAAGACCAACAAGCACAAGCGTCCCAAACCGCAGGGCTCCTCAGACAGCTACGCCTCCCCCCCGGGCAGCAGCCGCCCCCGCCGCCCCCCCACCGCCCCGGCCGCCACCCTGCGCCAGGCATGGGCCCCCTCAGAGGCATCTCAGGGCCAGACGCCCGGCGTGGGCTTCCTCCCACCCGTGGTGATGCCCTTCCAACCGGCCTACTTCCCCGTGCCGGGCCATGTGGGCGCAGAGGCGGCATGTGGGGTGACTCTCCTCAACGGCGGCGTCCAGCCGGGGGGGGTCCCTTTCACTGCACAGCCACAGCCCAGCATGCAGCCCATGCAGCCAGCGCAGCTCATGCCCTCAGTGCAGAACATGGTGCCCATGCAGTCAGCGCAGCCAGTACCGCCCTTGCCTTCCGTGCAGCCCTTGCCCCCCATGCCCCCAGTGCCAGCCCTGACCCCGTACATGGCGCCCGTCATGGCTGTTTTCCTCCCCAACTACCCCAGCTACCCCATGTTCCCGCAGGGACTGTGTGCCCCAGCCCCCTGCTCTCCCCCCCAGCCCTTCCCCTTCACCCCTTTCCACCCGGCGTCCTTCTCCGTGGCCCCGCCGCTTCAGGGGACCCCCGTGGCCTCCCAGACCCTGCTGGAGCCGCCCCTGCCACCCCCCAGGCCACCCCCCAGTCCACCCCCCAGTCCACAGCCACCCTCCACCGTCGGAGAGGACCTGGACCCGGCCCAGCCGCCCGCCCTGTTCTCCAGCTCCCGGTCCAGCTCCCCCCTCCAGCTCAACCTGCTGCAGGAGGAGCTGCCCAAGCCAGCGGAGGCAGCGGTGGGGGGCGCGGCGCTGCCGGAGACGCTGCTCGAACCGCTCGGCAAGAGGGACCGTGCCCACAGTGTATCTGGTGACCAGGACAGCCGGTCGACCTCCAGTGAGCTGCTGGACCTGCTGCTGCACGAGGGCTCGCCCTCCAGCACCGGCTCCCACGCCTCGGGCAGCGGCTCGGGGGAGTCGGGCGGGTCGCTGGGCTCGGGCTCGGACTCCCACGGCACCACAGGCACCTCTGCCAGCCACACGGGTGAGTACGCTGACCCGGGCCGCCGCACCCCAAACCTCTCCGTCCCTTCGGCGGCCCGGTCGCTGACGGGGGccgccctctctctcctccccttcaCAGGCAGCCTGCCGTCGAGCCACAGCAGCAAGTACTTCGCCAGCAACGACTCCTCGGACTCGCCCCGCCACTCGCGCCCGGGTCAGGAGGCGCCGGGGCCCTTCGACAGGCAGGCGGAGGATTCCCTGTGGAGCATGATCCAGCACACGCCCGAGCCCGTCATGATGAACTACCAGATCGTGCCACGGTACTGCGCCCCCCACCGGCGCCGCCAAGGCACCGCCCGCCCCCTCCACCCCGCCGCCCCGCAGGACCAGGCCCAGGTTCTGAAGGAGGACCGGGAGAAGCTGAAGCTCCTGCAGCAGCACCAGCCC

Function

GO:

id name namespace
GO:0032922 circadian regulation of gene expression biological_process
GO:0009648 photoperiodism biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002092 True 4281 mRNA 0.66 20 3095720 3110908

Neighbor

gene id symbol gene type direction distance location
AMCG00002090 NA coding downstream 5836 3087544 ~ 3089884 (-)
AMCG00002089 NA coding downstream 28807 3043648 ~ 3066913 (-)
AMCG00002083 NA coding downstream 134462 2956881 ~ 2961258 (-)
AMCG00002084 NA coding downstream 149567 2935521 ~ 2946153 (-)
AMCG00002077 utp3,LOC102785935 coding downstream 223447 2861912 ~ 2872273 (-)
AMCG00002093 LOC106567259 coding upstream 23200 3134108 ~ 3146480 (-)
AMCG00002095 NA coding upstream 35696 3146604 ~ 3147047 (-)
AMCG00002096 NA coding upstream 163515 3274423 ~ 3274918 (-)
AMCG00002104 NA coding upstream 385251 3496159 ~ 3498806 (-)
AMCG00002102 NA coding upstream 392138 3503046 ~ 3510980 (-)
G120789 NA non-coding downstream 2821 3091776 ~ 3092899 (-)
G120760 NA non-coding downstream 53220 3040548 ~ 3042500 (-)
G120754 NA non-coding downstream 75564 3008901 ~ 3020156 (-)
G120746 NA non-coding downstream 108941 2985573 ~ 2986779 (-)
G120743 NA non-coding downstream 142238 2953273 ~ 2953482 (-)
G120841 NA non-coding upstream 382048 3492956 ~ 3494050 (-)
G120842 NA non-coding upstream 389373 3500281 ~ 3502928 (-)
G120849 NA non-coding upstream 424914 3535822 ~ 3536525 (-)
G120853 NA non-coding upstream 427854 3538762 ~ 3540826 (-)
G120914 NA non-coding upstream 589584 3700492 ~ 3704364 (-)
G120748 NA other downstream 90803 2995508 ~ 3004917 (-)
AMCG00002085 NA other downstream 164702 2921252 ~ 2931018 (-)
AMCG00002078 NA other downstream 247783 2845382 ~ 2847937 (-)
AMCG00002044 NA other downstream 1605153 1486551 ~ 1490567 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 2534 3113442 ~ 3128440 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other upstream 62597 3173505 ~ 3186353 (-)
AMCG00002097 NA other upstream 296577 3407485 ~ 3466461 (-)
G120907 NA other upstream 602959 3713867 ~ 3716252 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other upstream 673328 3784236 ~ 3786544 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003657 per3 coding NC_007122.7 CM002895.2 39959039 ~ 40021080 (+)
grasscarp (Ctenopharyngodon idella) CI01000306_11107383_11122980 PER3 coding CI01000306 null 11107299 ~ 11123375 (+)