RNA id: AMCG00002092


Basic Information

Item Value
RNA id AMCG00002092
length 4281
RNA type mRNA
GC content 0.66
exon number 20
gene id AMCG00002092
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 3095720 ~ 3110908 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGCCGTCGAGCCCAGAGACGGGAAGCGCCGGGCCGCACGACGAGCGCACCTTTGCGGCTGTGAGACCTTTGTGTGACCGCCGGACACAACCCGGGCTGTGGATGCCGCACTGCCGTCGGTGAAGTGACTTTGTGAGCGAGCAGTCGCGGGGGCAGGAGTGGACTGGACGCGTTGCATTACGTCACTGCGGCCGGACCCGGTTGTGTGATCGGCGGGCAGGTGAGATTTTCTGTCTCCGTGGAGCGTAAAGTACCCTCCTGAGGGTGCCATTTGAACATCCCCGGTACGATGCCTCACAGACCATGACCACAGCGGACCACAGCGCACTGTCTCGTGATGTCACACATCCTGCACCCAGCCTGttagaaagcaaacaaaacaacaacttcaaGCACAAAAAACTTACCTTTTTTTaagatctatatatttttacctGTCCGCAATGGCCGCAGTCTCTTTGATAGACGTGGGCCCTCTGTTCCAGGAACGCTGCTGAGCTTGGGTCTTGTGGAGACATAGGCCTTCATCCTTACAGGAGCAGGTCTCAGCCCAGGAGCATAGTTTGGGTTTTAAAAAGCTTGGCTGTATTCAACTCTCTCCAGTCCCAGTGCAGTTGGGCGGCCATGCCGGGCATCAGCACGTTCCCCGGTGCGGAGGAGGAAGGCGCGTCGTCCTCGGGGGTCCAGGACGAAGGGGGCCAGTCAGCCGCACAGAAGCCCACACAGGAGCCTCGGGAGGTGGTGGCTTTACCAGGGGTggacgaggaagaggaggaggaggcggtggAGGAAGGAGCCGGGGCGCGGGGGGGCGCCGGGGGCTCGTCAGTGGGGGAGCAGGGCCAGGAGGACGTGGACATGAATAGCAACCACGGCTCGAGCAGCGGCACCGACTCGGTCAACCGGGGCTCCCGCGGCACCGGCAGCACCAAGAGcTCCAAGTCCCTGGCCACCTCGTCCTCCTCTCACAGCTCGAACTCCTACAGCCTGCACAGCGCCCGCTCCGGCCAGGACACGCACACCACCGAGGGCAGTGACGATCCGGAGCGGGGGCGGAACCAGATGCACCGGAAGCTGATGCAGACGGTGCAGGAGATGAAGAAGAGGCTGCCCTCGGAGAAGCGCGGTCACAGCAAGGCCAGCACCGTGGAGGCCCTCAACTATGCCCTGAACTGCGTCAAACAAGTGCAGGCCAACACTGCGTACTACAAGCTACTGATGAGCAACGGCCTGGCTGCACGCCCCGACGCCACGGCCTACACCCTGGAGCAGCTGGAGTCCATCACCTCGGAGCACACCCTCAAGAACACGGACACCTTTGTGGTGGTGTTCTCCCTGGCCAGCGGCCGGGTCCTGTACATCTCCGAGCAGGCCTCCAGCATCCTCAACTgcaagaggaagttcctgtacTCGGTGAAGTTCGTGGAGCTGGTCTACAACCAGGACGTCAATATCTTCTACTCCCACACCGCCCAGCCTCACCTGCCCCCCTGGAACGTGGACTCCAGTAGCGCGGCTATGCTGTTCCAGTCTGCCCAGGTCAAGTCCTTCTTCTGCAGATTCAGgggaggaAAGGACCGAGAGGGAGAGATGCGCTATAACCCTTTCCGCCTCACGCCGTACCTGCTGAGGGTGAACGAGCCGGGCATCGGCGAGAGGCAGCCCTGCTGTTTGGCGCTGGCCGAGAGGATCCACTCGGGCTACGAAGCTGCGTGTTCATGGAGTGCGGTGCCCTTGCTGGGATACCTCCCACAGGACCTAATTGGCACCTCGGCGCTGACGTGCCTGCACCCCGAGGACCGCCCTCTGATGCTCGCCATGCACCGCAAgaTCCTGAAGTACGCGGGCCAGCCCCCCTTCGACCACTCTCCGGTCCGGTTCCGCTGTCAGAACGGGGACTACGTGACCCTGGACACCAGCTGGTGCAGCTTCATCAACCCCTGGAGCCGCAAAGTGGCCTTCATCATCGGCAGACACAAAGTCCGCGCGGGGCCGCTAAACGAGGACGTGTTCGCACCCCGGAGCAAAGCCGAGCCGACGGTCGTGGACGAGGAGATCAAAGAGCTCCAGGCGCAGATCTATAAGCTCTTCCTGCAGCCGGTACATAACAACGGCTCCAGTGGCTATGGCAGTCTAGGCAGCAACGGCTCCCATGAGCACTACATCAGCGTGGCCTCGTCCAGCGACAGCAACGGCAACATCTGGGAGGACAGCCACCGCGAGCCGATGACCCTGCAGCAGATCTGCGCTGACGTGAACAAGCTGAAGAGCTGGGGGCAGCAGGCCTACCTGGACTCCCGCAGCAAACCTGTGCCCCTGGGCAGCACCGCCCCAGATAGACCAAGCGTTTCGCTGCCACATCCCTCGGGGGCGccggaggtcagaggtcacctCCCCGCTGCCCATGGCGACTCCAGGAAGCAGACGCACATTCCGTCCTACCAGCAGATCAACTGTGTGGACAGCATCATCAGGTACCTGGAGAGCTGCAGCGTCCCGGCCCTGAAGCGCAAGTGCGAGTCCCTGTCCAACACCACGTCCTCCGAGCCGGCCGacccgccccgccccgccccacCCGGCTCGGCTGCGGCGCCGGAGGAGTTCCGCCGGGTGGGTCTGACCAAACAGGTGCTGTCGGCGCACACGCAGAAGGAGGAGCAGGACTACGTGGACCGCTTCCGCCACCGCATCCTGCAGAGTCCATACAGCTCCTACCTGCAGCAGGACGGCAGCAGCAAGGCACCCTCGCACCCCCACGGCGACTGCGCCATGCGGTCCGGCAGCGCGGCGGGCTGGAGGAAGTCCAAGACCAACAAGCACAAGCGTCCCAAACCGCAGGGCTCCTCAGACAGCTACGCCTCCCCCCCGGGCAGCAGCCGCCCCCGCCGCCCCCCCACCGCCCCGGCCGCCACCCTGCGCCAGGCATGGGCCCCCTCAGAGGCATCTCAGGGCCAGACGCCCGGCGTGGGCTTCCTCCCACCCGTGGTGATGCCCTTCCAACCGGCCTACTTCCCCGTGCCGGGCCATGTGGGCGCAGAGGCGGCATGTGGGGTGACTCTCCTCAACGGCGGCGTCCAGCCGGGGGGGGTCCCTTTCACTGCACAGCCACAGCCCAGCATGCAGCCCATGCAGCCAGCGCAGCTCATGCCCTCAGTGCAGAACATGGTGCCCATGCAGTCAGCGCAGCCAGTACCGCCCTTGCCTTCCGTGCAGCCCTTGCCCCCCATGCCCCCAGTGCCAGCCCTGACCCCGTACATGGCGCCCGTCATGGCTGTTTTCCTCCCCAACTACCCCAGCTACCCCATGTTCCCGCAGGGACTGTGTGCCCCAGCCCCCTGCTCTCCCCCCCAGCCCTTCCCCTTCACCCCTTTCCACCCGGCGTCCTTCTCCGTGGCCCCGCCGCTTCAGGGGACCCCCGTGGCCTCCCAGACCCTGCTGGAGCCGCCCCTGCCACCCCCCAGGCCACCCCCCAGTCCACCCCCCAGTCCACAGCCACCCTCCACCGTCGGAGAGGACCTGGACCCGGCCCAGCCGCCCGCCCTGTTCTCCAGCTCCCGGTCCAGCTCCCCCCTCCAGCTCAACCTGCTGCAGGAGGAGCTGCCCAAGCCAGCGGAGGCAGCGGTGGGGGGCGCGGCGCTGCCGGAGACGCTGCTCGAACCGCTCGGCAAGAGGGACCGTGCCCACAGTGTATCTGGTGACCAGGACAGCCGGTCGACCTCCAGTGAGCTGCTGGACCTGCTGCTGCACGAGGGCTCGCCCTCCAGCACCGGCTCCCACGCCTCGGGCAGCGGCTCGGGGGAGTCGGGCGGGTCGCTGGGCTCGGGCTCGGACTCCCACGGCACCACAGGCACCTCTGCCAGCCACACGGGTGAGTACGCTGACCCGGGCCGCCGCACCCCAAACCTCTCCGTCCCTTCGGCGGCCCGGTCGCTGACGGGGGccgccctctctctcctccccttcaCAGGCAGCCTGCCGTCGAGCCACAGCAGCAAGTACTTCGCCAGCAACGACTCCTCGGACTCGCCCCGCCACTCGCGCCCGGGTCAGGAGGCGCCGGGGCCCTTCGACAGGCAGGCGGAGGATTCCCTGTGGAGCATGATCCAGCACACGCCCGAGCCCGTCATGATGAACTACCAGATCGTGCCACGGTACTGCGCCCCCCACCGGCGCCGCCAAGGCACCGCCCGCCCCCTCCACCCCGCCGCCCCGCAGGACCAGGCCCAGGTTCTGAAGGAGGACCGGGAGAAGCTGAAGCTCCTGCAGCAGCACCAGCCC

Function

GO:

id name namespace
GO:0032922 circadian regulation of gene expression biological_process
GO:0009648 photoperiodism biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151354 lncRNA downstream 2821 3091776 ~ 3092899 (-) True G120789
TU151321 lncRNA downstream 53220 3040548 ~ 3042500 (-) True G120760
TU151314 lncRNA downstream 75564 3008901 ~ 3020156 (-) True G120754
TU151294 lncRNA downstream 108941 2985573 ~ 2986779 (-) True G120746
TU151291 lncRNA downstream 142238 2953273 ~ 2953482 (-) True G120743
TU151382 lncRNA upstream 65676 3176584 ~ 3176844 (-) False AMCG00002091
TU151407 lncRNA upstream 296577 3407485 ~ 3466461 (-) False AMCG00002097
TU151417 lncRNA upstream 382048 3492956 ~ 3494050 (-) True G120841
TU151419 lncRNA upstream 389373 3500281 ~ 3502928 (-) True G120842
TU151418 lncRNA upstream 389416 3500324 ~ 3502928 (-) False G120842
AMCG00002090 mRNA downstream 5836 3087544 ~ 3089884 (-) True AMCG00002090
AMCG00002089 mRNA downstream 28807 3043648 ~ 3066913 (-) True AMCG00002089
AMCG00002083 mRNA downstream 134462 2956881 ~ 2961258 (-) True AMCG00002083
AMCG00002084 mRNA downstream 149567 2935521 ~ 2946153 (-) True AMCG00002084
AMCG00002085 mRNA downstream 164702 2921788 ~ 2931018 (-) True AMCG00002085
AMCG00002094 mRNA upstream 2569 3113477 ~ 3128440 (-) False AMCG00002094
AMCG00002093 mRNA upstream 23200 3134108 ~ 3146480 (-) True AMCG00002093
AMCG00002095 mRNA upstream 35696 3146604 ~ 3147047 (-) True AMCG00002095
AMCG00002091 mRNA upstream 62597 3173505 ~ 3186353 (-) True AMCG00002091
AMCG00002096 mRNA upstream 163515 3274423 ~ 3274918 (-) True AMCG00002096
TU151301 other downstream 90803 2995508 ~ 3004917 (-) True G120748
TU151271 other downstream 172499 2921252 ~ 2923221 (-) False AMCG00002085
TU151364 other upstream 2534 3113442 ~ 3127944 (-) True AMCG00002094
TU151499 other upstream 602959 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 673328 3784236 ~ 3786544 (-) True G120927
TU151612 other upstream 1103807 4214715 ~ 4219877 (-) True G120993
TU152605 other upstream 4725587 7836495 ~ 7839411 (-) True AMCG00002223

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007113 True 406 lncRNA 0.48 3 NC_007122.7 39993997 ~ 39998798 (+)
grasscarp (Ctenopharyngodon idella) CI01000306_11107383_11122980.mRNA True 4337 mRNA 0.56 22 CI01000306 11107299 ~ 11123375 (+)