RNA id: TU151294


Basic Information

Item Value
RNA id TU151294
length 1207
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G120746
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 2985573 ~ 2986779 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttgttttggtcattttatttaaaaaacacacacaaaatgaaatcacCCGAGtcatacaaacatttaatgatCAAATCTGAGACTGATTCAGCCCAACCAAGCTGGGGTCACTCTTCTGTCTGATGGAAAGGAGACGAGCCAGGGGTATTTACTGGGCATATGCTGGGAATGACAGACTCGGCACACCGACACACTGCCAGCGAACTGCAGGAGGAGATTTCAGCTTCGAACAGCAAGGCCGTGTCTCTGTCTTTCCAGAAGCACAGCATCCTCACCGCCTACTTGGTGCACCACCCGGAACTACATCATACATCTGAACAGGATTGAAGACCACATTTTCATATCGCtttcaaattgatttaataGTATCTACCGACTGATACGGCAGCAACATAACCTGCTGCACTGGGGGCAGCATAAGCCTCCAATTCAAGCATTTAGTTGTAGAATGATTTGAGCTGCACAGCCGGGCAGGAGCTTCCTAAAACGAGCACGAGACGAAAAAAGCTGACAGGATCGTTTCATGTCGGATACGGGTGGCTGGTGCTGAAGCAGTTAGTAAAAAGGTCGCCTTCATTTTTGACTGACAGGGCTGTGCAGGGCAGGGAAGGAGAATGACGCACAAGATCTATGCATTGCTGAACCGCTGAAGATGTTTAAAGATTCTAAGTAGATTTACAGTAATtcgagtttgtttttaaatgaggaGAACAATGGGTTACAAACTGGAAATGTGGCCATTGTCTTGATCAGGAATGTGATGAGGCAATACTACGCAAAGCCGAGATCCACATCGGCATCGAGAGTGACAATGCCGTGCAAGGGGCGGCATCCTGGATACCACACGATTGATTCCCGAACCCCAGATCTCGGGGTCGTCCAACACAAAACGTCTCCGGGGGCAGAATCGGGGGCGGGGCAGAGAGGACAGGAGAAATGAGGGttagctgtgtgtgtctggctgtCCTGAATTTAAGGTAAGATCAGTCTGGGTGTGTAAGACTTAAATCCACCGAAACCATTAAAGTATTTCCCtcaccccacaaaaaaaaaaaaggcggcATGCACAAGTTTCCCCCAAGAAGGCAGTCTCTGTTGTTTACCGGCCAGACAGCGGGCGCAGCCTGGGAGTGCGTCACATCTCCCCGCACTGCGCGATCACGATGGGCAGCTTGGGCTTATTGTTGGGCCCAGTGGGCACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151291 lncRNA downstream 32091 2953273 ~ 2953482 (-) True G120743
TU151243 lncRNA downstream 137636 2845382 ~ 2847937 (-) True AMCG00002078
TU151216 lncRNA downstream 289186 2696063 ~ 2696387 (-) False G120683
TU151217 lncRNA downstream 289596 2695581 ~ 2695977 (-) True G120683
TU151109 lncRNA downstream 761168 2223343 ~ 2224405 (-) True G120601
TU151314 lncRNA upstream 22122 3008901 ~ 3020156 (-) True G120754
TU151321 lncRNA upstream 53769 3040548 ~ 3042500 (-) True G120760
TU151354 lncRNA upstream 104997 3091776 ~ 3092899 (-) True G120789
TU151382 lncRNA upstream 189805 3176584 ~ 3176844 (-) False AMCG00002091
TU151407 lncRNA upstream 420706 3407485 ~ 3466461 (-) False AMCG00002097
AMCG00002083 mRNA downstream 24315 2956881 ~ 2961258 (-) True AMCG00002083
AMCG00002084 mRNA downstream 39420 2935521 ~ 2946153 (-) True AMCG00002084
AMCG00002085 mRNA downstream 54555 2921788 ~ 2931018 (-) True AMCG00002085
AMCG00002077 mRNA downstream 113300 2861912 ~ 2872273 (-) True AMCG00002077
AMCG00002079 mRNA downstream 128446 2856058 ~ 2857127 (-) True AMCG00002079
AMCG00002089 mRNA upstream 56869 3043648 ~ 3066913 (-) True AMCG00002089
AMCG00002090 mRNA upstream 100765 3087544 ~ 3089884 (-) True AMCG00002090
AMCG00002092 mRNA upstream 108941 3095720 ~ 3110908 (-) True AMCG00002092
AMCG00002094 mRNA upstream 126698 3113477 ~ 3128440 (-) False AMCG00002094
AMCG00002093 mRNA upstream 147329 3134108 ~ 3146480 (-) True AMCG00002093
TU151271 other downstream 62352 2921252 ~ 2923221 (-) False AMCG00002085
TU151301 other upstream 8729 2995508 ~ 3004917 (-) True G120748
TU151364 other upstream 126663 3113442 ~ 3127944 (-) True AMCG00002094
TU151499 other upstream 727088 3713867 ~ 3716252 (-) True G120907
TU151529 other upstream 797457 3784236 ~ 3786544 (-) True G120927
TU151612 other upstream 1227936 4214715 ~ 4219877 (-) True G120993

Expression Profile