G125160


Basic Information

Item Value
gene id G125160
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26126554 ~ 26130462 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU156879
TGAAAAGGGCAAAattctttaatgtgttttgtaggAAAATACATCTGAGAAAATAAGTTAGTGTCTCCGTTAAGAAGTTACACATccgtttaaaatgtttacagagtTTATACAGGGCAATTGTATGGTGAAACATGTCATCAACAATTTACTGACTCTCCAGTGGAAGCAAGCTGTACTACCTGAAACATGTCCTCTTCAGTGAAAATATGAAGCATTCAAAATAACACATCTTGCAGCCATTTGCAACTTTACCACCTTGAATGAGTTGTTGTATGTAACACCAGTCACTACTGAATTAACCACACACTACATTTGATCAAATTCTGAAATCCAATTCTTAATTtagcacacaaagcacaacCTAAAACTGAAGGTTaaagctgtgtatatatatatatataAACTTTCATATATTAGAACATAACTATGCTTTTTATATAAGAAATTGAGGGACATATTCAAAGAATTTCAAGTGTTCTATATTCATTTCTGCCAGATTCAAAGCTATATTGTACAATGCTACCGTTTCTAAATAGCATGCCCTTCAAAAAAATACACAcctacacagacagacatattgAGGCAGATAGGTGGACACACAGGTATataagatagatagatagtctACCTTTGAAAAAGTCAATATTAAGCCTAACATATGTTGACAGTGTATCAACCTATTTCTCCTGCCTCAGCCCTCTAAAGTACTTTATTGAATTTGTTGGTATCCTTGAGCTATTACTGTGCTTATCCATTTAGCCCGACACATTTGTTATCATAGTGATTGTTGATGGAGAGCCATGCACGTCTATCATTGATAAGAAATCAATTTTTAAGCATccaaaaaaataaggaaaccTGCTTTCTGTTGCAAAACTGGCTTATTATAAAAGAAATCACTAGGCAATTCTCAGAGCACTTTAAAGCCTCATTCGTAAAAGACAGGGCTGATATCTGCTATTATTTGGATAAAGCAGCAGCAATCAACACAAAAGCACAAGTTAGTGTCTAGTTTCTAATGGGAATGGATTTCAGTTTCCTTTCTAACTTAATAAACAGGTGCAAGTCAAATGTGTATGCCATGTTATTCTGCAAAATTGCGTAGACAAATAAACATCTACATTGCCAACCATTCAGACTAACAAAGCACCCCCAGCTCTTTCCCATCTTGTGTGCTAGTTTTAAAGTGAGCTTATTGACTAAACATTTGCTTTTGCAGGCctggaagaaaataatgatacaaaGAGAGTTTACCCTTACAATAACTAGTTATGGAAATGCCACAGTGAGGATAAATGTGGCCTTGTACAAGTTTTTGAAAGCTCACTTTGTAATACTCAGTGCAATTTGATCTTGACAAACTGCTGTTAATTGCCAAAACAGATTACAGTCTTTAATTACcagagtttttttatttatctcatGCAAGGATAGTAAAATGGATTGAACAAGGGCTTCTGCATGAAGATGTTGCCAATCTCGTTTATACTTATGTTGAAAACCGTCAGATTTTGTGGACTTGTTTAAAAACTGCATTAGTGCTCATTGCAAACACATCCAACAGAAAGAAGTAGAGAAATTAAAAGTAGGGAAAATAAGAATAGGTCAGTCACATTTGAAAACTATCCAAATAGCACCCTGCAACGTTACTGAAATTATGCCTGTTCTATATCCATTTATAGCTCTGTATCAATAATATTGGAACACTGCTACATTTCATTGCCTGTTGATTTTATGTAAAACTAAacgaggaaaaaaacaaaatctgtcagCATCTCATGTATTGCATcttgtggagaaaaaaacaaacgaaTCCACTACACTGCTTCTAGGGTTGGTTCATAAAAGGCATTGTTTGACTTTCATTTTGTGAACAATCCACATGTCTGTATGTTGTTCTAAGGTTTATTACATCCTTGCCCCACTGCAATTCACCCTCATCATGTTTTGCATGTTCTTAATACAGTATTAAGAAAGGTTGTTGGTGTAATAGGtaatatatgcattatattcTATTGCTACAGAAAAAGACAGCAGAAAATATTCACTAGTATAAGAGCTTAGTGCAATTGGCCCTTCAAACTCTTGAAAGGATCATTGGAGAGGGAACATATCATTAAAATGGTATAATTTAGAAACTTGAGGGCATTATTACAGGCATATATCTTATAAATAGCATGCACTGTTTTCCATATTTACAGcacaaaaatatagaaataaaaggaaattacaCCATCAGCTTTAACTGGAGACAAATGTTCAGAGAAAATCCTTAAGCGTgaaagaaacagacacagctTTTTGTCTACAAAGActcccattaaaaacaaatgaagggTAAAGAGGACATTTTTTAAACCCTGAGCTCAAGAAAGTGCATGACACCAGCATATATGGAAGGGTAAGAAATAATACAAGCCTTTTTATCAATACAGAAATATCCTCAGATTTTCACTGAAggattttttccttcttttaaagATTCCAGCCATGTTCATGGAAGCCTTTAGatacaataagaataatatttaaaacaaacatcccAATTCTGTGCCAAACACATTGATATCTCACCTGGATGCATTTATTCCAATAactactgaaaagaaaaacttagattaacagaaatatatatagttgaGTATTCTACAAACCAATACACATATCATTTATCTAGATCTTATTTTCTATGAGATACAAATGGTTAAATGGTTAAAACAAAAGTATgcttcaaaaggaaaaaaagagaggcTCTGAGACAGAAAGCAATGATTGGActtcacaaacaaaatgtgagaTTCACTTTTTGTAAGACTCATGGGGGGGAAATGGGGCTACATTAGTCTTTACAAAAGCAAACCTCTTACTATGATTATGAAGATGCAGAAAATAATCCAATtgcataaaaacaggaaaaatggaaaagcaaaaaatgcatAGCTGATTGTGAATGTATACATTGTCTTTCTACAGCTTactgaacaggaaaaaaagatgTCTGGACTCAGAAATGAGAGAAAACATACTCTTTTAGCAAAAAAAGatcacaagtttattttacACTAGGATCAAGACCTAGAAACAGAAATTTCAAAATGCACTTGATGCGGTCAAGGCCATGGTCAACATTTCAGTTGGTCCCCCAAAGGTGCTTATAAACCTCCTATgtacgttttattttattaaatgtaacattctGCACTAGTTTCTATATGCTTTCCTCCTATGCTCAGGAGTGCTCTATTGTCACCTAATGTGTTTATTCAGCCAACAAAGACTGGACTCAAAACCTTAAGGCACCCAAATTCACAATGCAACCGAGCCTGTGCGGCACACTTTCCCCAGTAATTCTTTGGTTTTCAACTCTCTGGAATCCCACACTTTCACACCGAAATGAAAACTGAGCACAAGATGTTGGAGACCTAATCATATTCAAAGATAGCAAAGACAATAACAGTAAGAGCAGTAGGAGGAAGAATGCCATAAATCACTTCTTACTTAATTTCAGTAAAAAGGAAGGAACTATTTTTCTTCATTAAGTGTGAATGAACAAAACTCCATGTGGGGGGgagggataaataaataaaacaaaaacttctgTTAGTGGCACTGTTGTATTGAACATTGTGTGCCCTAGGCCACTAGTCTGGCTCAGTTTTACAGTCTGTacagtggggtgggggggttcaaTGCCTTTCAGAAGTTCTGCTGTCTGCGCTTCTTGGCATCCATGGCGTCGAGGATGGGCTGCCTCTTGGCGGTGTAGCGCTGTCTCAGTTCCTCGATCTCTCGCTCCATCATGGGGTCCAACGCGCTGAGCCGCATCTGCAGCTCCTCAAAGCTCAGGTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156879 True 3854 lncRNA 0.36 2 26126554 26130462

Neighbor

gene id symbol gene type direction distance location
AMCG00002673 osr2 coding downstream 121197 26002815 ~ 26005357 (-)
AMCG00002672 vps13b coding downstream 136991 25936202 ~ 25989563 (-)
AMCG00002674 LOC106594737,LOC104943785 coding downstream 303852 25788383 ~ 25822702 (-)
AMCG00002670 NA coding downstream 373940 25746083 ~ 25752614 (-)
AMCG00002671 vps13b,LOC104942627 coding downstream 449904 25647813 ~ 25676650 (-)
AMCG00002681 kcns2,LOC102221451 coding upstream 6495 26136957 ~ 26138496 (-)
AMCG00002680 NA coding upstream 77808 26208270 ~ 26234043 (-)
AMCG00002679 NA coding upstream 112225 26242687 ~ 26260306 (-)
AMCG00002689 NA coding upstream 187881 26318343 ~ 26319376 (-)
AMCG00002687 laptm4b,LOC107702097,LOC107724295,LOC107394696,LOC107565197,LOC105907721 coding upstream 192436 26322898 ~ 26338157 (-)
G125075 NA non-coding downstream 514257 25610117 ~ 25612297 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding downstream 672556 25451215 ~ 25453998 (-)
G125036 NA non-coding downstream 692826 25374880 ~ 25433728 (-)
G124975 NA non-coding downstream 1176196 24948150 ~ 24950358 (-)
G124907 NA non-coding downstream 1549423 24576165 ~ 24577131 (-)
G125178 NA non-coding upstream 74430 26204892 ~ 26205871 (-)
G125200 NA non-coding upstream 111792 26242254 ~ 26242531 (-)
G125269 NA non-coding upstream 365487 26495949 ~ 26498450 (-)
G125291 NA non-coding upstream 525166 26655628 ~ 26655871 (-)
G125297 NA non-coding upstream 531242 26661704 ~ 26663029 (-)
G124848 NA other downstream 1786988 24291787 ~ 24339566 (-)
G124829 NA other downstream 1864731 24261565 ~ 24261823 (-)
G124719 NA other downstream 2830439 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 2933898 23181921 ~ 23192656 (-)
AMCG00002596 NA other downstream 4223957 21901292 ~ 21902597 (-)
AMCG00002682 NA other upstream 136590 26267052 ~ 26279621 (-)
AMCG00002688 NA other upstream 152878 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 483014 26613476 ~ 26664767 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 724431 26854893 ~ 26875246 (-)

Expression


Co-expression Network