AMCG00002754 (dpysl4,LOC107582189,LOC107653119,LOC107706606,LOC107654562)


Basic Information

Item Value
gene id AMCG00002754
gene name dpysl4,LOC107582189,LOC107653119,LOC107706606,LOC107654562
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 1020313 ~ 1031864 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002754
CGGGTTCAAGTGAAGCTAAAAACACGCATCGATTTGCAGAGCATTGCGATGAGATGTATTAAGAGCCTCACTGAGCCTGTGCCAGTGCAGGCCGGCTGCGGTGTCATTAGGCGCTGGATGCGTCTGGCATGCTAATCAGGCAGATGGCAGGCGAGCAGCTTTGTGCGTAGAGGCAGCACTGCGTCtggcacagcagcagcaccgACACACCAGACACATTGTATCCGTCTGCACCGAGCCGccccgagccgagccgagccgagccgaacCGAGCCGAACCGAGCCCACAGCCAGCCGCGTCCCGTCCGCCGCACTCACCCCGCCCTGGCACTGAAGCACGGCCGGCATGTCTTACCAAGGCAAGAAGAGCATCCCTCGCCTCACGagtGACCGCCTCATTATCAAAGGTGGAAAGATTGTCAACGATGACCAGTCTTTTTATGCTGATGTCTACGTAGAAGACGGGATCATTAAGCAAATAGGAGAGAATCTCATTGTCCCTGGAGGCGTGAAGACTATTGATGCCTACGGTCACATCGTGATTCCCGGTGGAATAGATGTCAACACCTGTCTTCACATGCCGTACCTGGGCATGACCCCGGCTGATGACTTTTACCACGGCACTAAAGCCGCCCTGGCTGGGGGAACCACCATGATCATTGACCACGTCCTCCCTGAACCCGGGTCAAGTCTTCTTGCAGCTTACGATCAGTGGAGAGACATCGCGGACAAGAAATCCTGCTGTGATTATTCCCTTCATATGGATATCACACACTGGCATGAAGGCCATATAGAAGAACTGGAAGCATTGGTCAAGGACAAAgGTGTAAATTCATTTCTGGTCTTCATGGCCTATAAGGACATGTATCAGTGCTCTGATTCTCAGatatatgaaatattaagcATTCTAAGAGACCTGGGGGCCATTGCTCAAGTACATGCAGAAAATGGAGATATTATTCAAGAGGAGCAGAAAAGATTGCTAGACCTTGGGATCACAGGTCCAGAAGGGCACGTTCTGAGTCACCCAGAGGAGGTTGAGACTGAAGCCGTGTACCGGGTATTAACCATAGCCAAACAGGCCAACTGCCCACTGTACATCACAAAAGTCATGAGCAAGACTTCTGCCGACGTTATTGCCCAGGCCCGAAGGAAAGgtaTGGTGGTTTATGGGGAACCAATCACAGCCAGTCTTGGAACCGATGGCTCTCATTATTGGAGTAAGAACTGGGTGAAAGCGGCTGCCTTTGTCATGTCCCCTCCGGTCAACCCAGATCCCAGCACTCCCGACTACCTTAACTCACTGCTCTCCTGTGGAGATCTGCAAGTAACTGGCAGTGCCCACTGTACTTTTACCACGGCCCAGAAAGCGGTCGGAAAAGACAACTTTACACTGATACCTGAAGGGACCAATGGAATCGAGGAACGGATGTCAGTAGTTTGGGAAAAATCTGTGGCAACGGGGAAGATGGATGAGAACGAGTTTGTCGCTGTGACGAGCACCAACGCCGCCAAGATCTTCAACCTCTACCCCCGGAAGGGACGGATAGCCGTTGGCTCGGATGCGGATATCGTCATCTGGAACACAAAGGAGACCAAAATAATCTCCGCTAAATCACACAACTTGACCGTGGAGTGCAACATCTTCGAGGGAATGGAGTGCCACGGAGCTCCTGTGGTGGTCATCAGCCAGGGTAAAATTGTGATGGAGGCTGAGAAACTCAGTGTCACCGAAGGATCTGGTCGCTTCATCCCACGGAAGACATTCCCGGATTATGTTTACAAACGAATAAAAGCCAGGAACAGGCTCGCCGATATCCGCGGCGTTCCAAGAGGACTCTATGACGGCCCAGTCCATGATGTCACCACAGCCACCAAAGCTGTGGCCCCCACTCCCACCTCCAGGGGCTCGGCCTGTCCCGGCAAAGCCCAGATGGTCCCGGTCCGGAACCTGCACCAGTCCGGGTTCACCCTGTCcgGCAATCAGATGGACGACCACATTCCCAGACGCACTGCTCAGAGGATCGTTGCCCCCCCTGGTGGCAGATCTAATATAACTTCCCTTTCGTGATTTCGGGTGTGCAAAACAGCTTGTGTCCGGGCTGATGTTTTAAAGGGGAATACTCTAGTATCAAACACTGCCAATAATAGTACACCGGAATAGCAGACAGGGACAGCGCACTGGTAGTTCTGTTGCTTCATGAATGCCATCATACCAACTGCCAAAATACTACTAGCAAAAGAAAAAGTTACCACATATAACCtgaagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgagaataaAGTTTTTACTCCTGCCTTTCTCTGTTGGATCTCCAAAGCATGCTCCTAGAACCGAACAGCCATCGCCTGACACTTATTATTCGCTGCTGTACGCCATGAATTAAAGCTGAGACTTTGGTTTGAATTTATTGGATTAGTTGCTGTGCTGCGTTATAGTTTTacttaaaatcacaaatattcGCTGCTGCTTTAGAACAAGGTTCGGATTAAAGGAAGACAGTAGTTTCAGTGTATTAAGGGTACGGAAATCAATGTAGTGCTGCTCTTTGTACAGTACTATGAGTCTGTTAGTTATTGGCCATTGATTGACTCTGGATTTGACCTTTAGGATTCAAATGTTTCTTTCCAGGTTACATGAAGACCCTTTTTATCGAAAGCTAAGGTTTCGtcctgttaatatatatattacaaatattagcaaagagaaaaacaatatataaccCGAGTGATAGTGTGCAGACTTCTTTCTAAAGTCTTAATTTCTTAATAGACTGATTCTCCTCAGAGGTCATTTGGAATTGTAGACTTGCCTAGATTTGACTTGTGATTCTCTGGCTCTAGATGTTCATAACCACAGACTGTCTCCTTCGTAGTgtggatttaatatttttgtattttttttttttttttaaacaaaatcttaaTCTGGTGCTGTAAAACCATATACTGTACATGGCCAAATACAAAGGTCATGGATTGAAAAACAATGGTTTTGAAAGTCACTTTTAAAATCTGGTTTAAATTTTGAGTTGTCTATTCTTGTATTGTTCTTCTACCTTTGTAATCCTCGTTTGTACTTTTCAACTTCCTACAAAAATGACAATTTGTACAACCTAAATACTTGAATTAACTTTGTTtcgcttttttattttttaaacgcaATGGAAAGTTTTTATGGTTCAGTAAGTATCTGGAACTGTAATCCACAGTGGTGTGTAGTATTCGTCTGAGGGAAAACTGGTCTGTCAGTTGATCTTTTCTTacctttttctgtgtttgtctgtaaaTATTggattaaaaatatgcatgttctacaaaacactgttttgtcttgaataaagtttgtgaaataa

Function

symbol description
dpysl4 Predicted to enable hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds. Predicted to act upstream of or within neuron death and neuron projection guidance. Predicted to be located in cytoplasm. Is expressed in nervous system; spinal cord neural tube; and trigeminal placode. Orthologous to human DPYSL4 (dihydropyrimidinase like 4).

NR:

description
PREDICTED: dihydropyrimidinase-related protein 4 isoform X2

GO:

id name namespace
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002754 True 3380 mRNA 0.46 14 1020313 1031864

Neighbor

gene id symbol gene type direction distance location
AMCG00002749 NA coding downstream 68617 944861 ~ 951696 (-)
AMCG00002751 p4ha1,LOC106578992 coding downstream 100838 910725 ~ 919475 (-)
AMCG00002750 NA coding downstream 112867 904455 ~ 907446 (-)
AMCG00002744 NA coding downstream 166583 846563 ~ 853730 (-)
AMCG00002745 micu1,LOC107754762,LOC107702683 coding downstream 176593 841258 ~ 843720 (-)
AMCG00002756 NA coding upstream 1582 1033446 ~ 1034599 (-)
AMCG00002755 jakmip3 coding upstream 3683 1035547 ~ 1069394 (-)
AMCG00002758 ppp2r2d,LOC105009682 coding upstream 63131 1094995 ~ 1103898 (-)
AMCG00002764 glrx3,LOC102791736 coding upstream 363147 1395011 ~ 1410128 (-)
AMCG00002767 mgmt coding upstream 509322 1541186 ~ 1551984 (-)
G138430 NA non-coding downstream 121896 895012 ~ 898417 (-)
G138373 NA non-coding downstream 215158 803573 ~ 805155 (-)
G138371 NA non-coding downstream 218546 801214 ~ 801767 (-)
G138352 NA non-coding downstream 271844 747494 ~ 748469 (-)
G138324 NA non-coding downstream 536710 483224 ~ 483603 (-)
G138535 NA non-coding upstream 457698 1489562 ~ 1518053 (-)
G138559 NA non-coding upstream 901496 1933360 ~ 1933995 (-)
G138594 NA non-coding upstream 1052034 2083898 ~ 2084097 (-)
G138678 NA non-coding upstream 1470249 2502113 ~ 2502314 (-)
G138720 NA non-coding upstream 1659566 2691430 ~ 2691869 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 94915 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 198722 805760 ~ 821591 (-)
AMCG00002725 NA other downstream 830976 184121 ~ 189337 (-)
G138245 NA other downstream 873473 144926 ~ 146840 (-)
G138741 NA other upstream 1686344 2718208 ~ 2719419 (-)
AMCG00002828 NA other upstream 2896897 3928761 ~ 3953324 (-)
G138932 NA other upstream 2969786 4001650 ~ 4002804 (-)
AMCG00002935 LOC106589936 other upstream 6030609 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 6316947 7348811 ~ 7352821 (-)

Expression


Co-expression Network