AMCG00002818 (LOC107660481,LOC107745581,LOC106578991,LOC107598034)


Basic Information

Item Value
gene id AMCG00002818
gene name LOC107660481,LOC107745581,LOC106578991,LOC107598034
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3270489 ~ 3293427 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002818
CTCTAATGTGCACTCCACTTATTATTGCactgtttttgatttgtatatagtttgtatctatttttaacacttgttttctattttttggggAGGGAATCCCATtgcactggaaaaaaaactaaacgcCACATTTGCAAAGGAACAAAAAGTCCCAATTGTTTGAGAAGATCACAGGAGCGCACAGGATTGCGCTAATCGGATCTCGTCTTGAATTGTGCTGCTGTGTTAGTCCATCATGCTGTGGCCGCTCCTCTGCGCCGGGCTGCTGTTTGCGCCTTTGCTGGCCGACGCTCACATCTCCAAGCGCTATGTCCTCGGCTGTCCGGACCGCTGCGACAAGTCCCTGTGTCCCCCGATCCCGGCCGACTGCATAGAAGGGGACATGCTGGACCAATGCGACTGCTGCCCGGTCTGCGCCACCGGGGAAGGCGAGCCCTGCGGCGGCTCGGGCAGGCTGGGCGACCCGGTGTGCGCAGAGGGGCTGGAGTGCTCCGGGGCGGACGGGGTGGCTCACTCTGCCACGGTGCGGCGCAGGGCTAAGAgcggcgtgtgtgtgtgcaagagcCCCGAGCCCGTGTGCGGCAGCGACGGCGTGTCCTACCGCAACATCTGCGAGCTGCGCAGGGTCAGCAGCCGAGCCCAGAAGCTGCAGCAGCCGCCGGTCATCTTCATCCAGCGGGGCGCCTGTGGGCAGGGCCAGGAGAACCCAGACAGCCTGCGGCACCGATACAACTTCATCGCTGATGTGGTGGAGAAGATCGCTCCAGCCGTGGTTCACATTGAACTGTACCGCAAGATGGTCTTCTCAAAAAGGGAGGTGGCGGTGGCCAGCGGCTCCGGCTTCGTCGTGTCGGAGGACGGGCTGATCGTCACCAACGCGCACGTGGTCGCCAACAAGCACCGCGTCAAGGTGGAGCTGAAGAGCGGCGCCACGTACGACGCCAAGATCAAGGACGCGAAGCTCCCGGTGCTGCTGCTGGGCCGCTCGGCAGACCTGCGGCCCGGGGAGTTCGTGGTGGCCATCGGCAGCCCGTTCTCGCTGCAGAACACAGTGACCACGGGCATCGTCAGCACCACGCAGCGGGGGGGCAAGGAGCTGGGGCTGCGCAACTCTGACATGGACTACATCCAGACGGACGCCATCATCAACtacGGGAATTCGGGAGGTCCCCTAGTGAACCTGGACGGGGAGGTGATCGGGATCAACACCCTGAAGGTGACGGCCGGCATCTCCTTCGCCATTCCCTCCGACAAGATCCGGCAGTTCCTGGCTGAGTCCCACGACAGGCAGGCGAAAGGGAAAACGGTATCAAAGAAGAAGTACATGGGGGTTCGAATGATGACCCTGACTCCATCACTCGCCAAGGAGCTGAAGGAGCGTCACAAAGACTTCCCAGACGTGACTTCGGGGGCTTACGTCATCGAGGTCATCGCCAAGACGCCAGCAGCAGCCGGCGGCCTGAAGGAGCACGACGTCATCATCAGCATCAACGGGCAGCGCGTGTCCTCGGCCAGCGACGTGAGCGACGCCATCAAGCGGGACGGAGCGCTGCGGCTCGTGGTGCGCCGGGGCAACGAGGACGTCATCCTGAGATCGACCCTTGACCTCACACTCCggccccccgcccccgccccgcctccctccttccctccgaGCTGGTTCTCAGTGCTTCTCTATCGGACCCTGACGGACGGGGCATGTCTGCAGCGGCCACGCCCCGGCCAGAGCCTTCACCCCGCCGCCCCTCTTCCTGCTGCAGAGGACTGA

Function

NR:

description
PREDICTED: serine protease HTRA1B

GO: NA

KEGG:

id description
K08784 HTRA1, PRSS11; HtrA serine peptidase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002818 True 1768 mRNA 0.62 10 3270489 3293427

Neighbor

gene id symbol gene type direction distance location
AMCG00002813 NA coding downstream 51251 3213625 ~ 3219238 (-)
AMCG00002812 NA coding downstream 63933 3198668 ~ 3206556 (-)
AMCG00002811 NA coding downstream 78993 3181102 ~ 3191496 (-)
AMCG00002805 ikzf5,LOC107744272,LOC104955501,LOC107583523 coding downstream 89925 3169166 ~ 3180564 (-)
AMCG00002806 acadsb,LOC107746745,LOC102776774 coding downstream 101985 3162801 ~ 3168504 (-)
AMCG00002820 plekha1 coding upstream 11138 3304565 ~ 3328956 (-)
AMCG00002817 NA coding upstream 38290 3331717 ~ 3345334 (-)
AMCG00002819 NA coding upstream 85179 3378606 ~ 3379298 (-)
AMCG00002824 grid1,LOC107375932,LOC106530676 coding upstream 372022 3665449 ~ 3667197 (-)
AMCG00002829 NA coding upstream 684229 3977656 ~ 3979035 (-)
G138799 NA non-coding downstream 157407 3060561 ~ 3113082 (-)
G138742 NA non-coding downstream 549785 2720412 ~ 2720704 (-)
G138738 NA non-coding downstream 555801 2714377 ~ 2714688 (-)
G138737 NA non-coding downstream 562414 2707869 ~ 2708075 (-)
G138720 NA non-coding downstream 578620 2691430 ~ 2691869 (-)
G138873 NA non-coding upstream 82821 3376248 ~ 3378038 (-)
G138906 NA non-coding upstream 631740 3925167 ~ 3928618 (-)
G138948 NA non-coding upstream 782188 4075615 ~ 4076838 (-)
G139024 NA non-coding upstream 1162365 4455792 ~ 4456002 (-)
G139025 NA non-coding upstream 1172527 4465954 ~ 4466189 (-)
G138741 NA other downstream 551070 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 2345091 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 2448898 805760 ~ 821591 (-)
AMCG00002725 NA other downstream 3081152 184121 ~ 189337 (-)
G138245 NA other downstream 3123649 144926 ~ 146840 (-)
AMCG00002828 NA other upstream 635334 3928761 ~ 3953324 (-)
G138932 NA other upstream 708223 4001650 ~ 4002804 (-)
AMCG00002935 LOC106589936 other upstream 3769046 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 4055384 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 4637739 7931166 ~ 7938241 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005218 htra1b coding NC_007123.7 CM002896.2 11388724 ~ 11457625 (-)
grasscarp (Ctenopharyngodon idella) CI01000161_02552972_02601762 HTRA1B, HTRA1, HTRA1A coding CI01000161 null 2552972 ~ 2601762 (+)