RNA id: AMCG00002818


Basic Information

Item Value
RNA id AMCG00002818
length 1768
RNA type mRNA
GC content 0.62
exon number 10
gene id AMCG00002818
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3270489 ~ 3293427 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTAATGTGCACTCCACTTATTATTGCactgtttttgatttgtatatagtttgtatctatttttaacacttgttttctattttttggggAGGGAATCCCATtgcactggaaaaaaaactaaacgcCACATTTGCAAAGGAACAAAAAGTCCCAATTGTTTGAGAAGATCACAGGAGCGCACAGGATTGCGCTAATCGGATCTCGTCTTGAATTGTGCTGCTGTGTTAGTCCATCATGCTGTGGCCGCTCCTCTGCGCCGGGCTGCTGTTTGCGCCTTTGCTGGCCGACGCTCACATCTCCAAGCGCTATGTCCTCGGCTGTCCGGACCGCTGCGACAAGTCCCTGTGTCCCCCGATCCCGGCCGACTGCATAGAAGGGGACATGCTGGACCAATGCGACTGCTGCCCGGTCTGCGCCACCGGGGAAGGCGAGCCCTGCGGCGGCTCGGGCAGGCTGGGCGACCCGGTGTGCGCAGAGGGGCTGGAGTGCTCCGGGGCGGACGGGGTGGCTCACTCTGCCACGGTGCGGCGCAGGGCTAAGAgcggcgtgtgtgtgtgcaagagcCCCGAGCCCGTGTGCGGCAGCGACGGCGTGTCCTACCGCAACATCTGCGAGCTGCGCAGGGTCAGCAGCCGAGCCCAGAAGCTGCAGCAGCCGCCGGTCATCTTCATCCAGCGGGGCGCCTGTGGGCAGGGCCAGGAGAACCCAGACAGCCTGCGGCACCGATACAACTTCATCGCTGATGTGGTGGAGAAGATCGCTCCAGCCGTGGTTCACATTGAACTGTACCGCAAGATGGTCTTCTCAAAAAGGGAGGTGGCGGTGGCCAGCGGCTCCGGCTTCGTCGTGTCGGAGGACGGGCTGATCGTCACCAACGCGCACGTGGTCGCCAACAAGCACCGCGTCAAGGTGGAGCTGAAGAGCGGCGCCACGTACGACGCCAAGATCAAGGACGCGAAGCTCCCGGTGCTGCTGCTGGGCCGCTCGGCAGACCTGCGGCCCGGGGAGTTCGTGGTGGCCATCGGCAGCCCGTTCTCGCTGCAGAACACAGTGACCACGGGCATCGTCAGCACCACGCAGCGGGGGGGCAAGGAGCTGGGGCTGCGCAACTCTGACATGGACTACATCCAGACGGACGCCATCATCAACtacGGGAATTCGGGAGGTCCCCTAGTGAACCTGGACGGGGAGGTGATCGGGATCAACACCCTGAAGGTGACGGCCGGCATCTCCTTCGCCATTCCCTCCGACAAGATCCGGCAGTTCCTGGCTGAGTCCCACGACAGGCAGGCGAAAGGGAAAACGGTATCAAAGAAGAAGTACATGGGGGTTCGAATGATGACCCTGACTCCATCACTCGCCAAGGAGCTGAAGGAGCGTCACAAAGACTTCCCAGACGTGACTTCGGGGGCTTACGTCATCGAGGTCATCGCCAAGACGCCAGCAGCAGCCGGCGGCCTGAAGGAGCACGACGTCATCATCAGCATCAACGGGCAGCGCGTGTCCTCGGCCAGCGACGTGAGCGACGCCATCAAGCGGGACGGAGCGCTGCGGCTCGTGGTGCGCCGGGGCAACGAGGACGTCATCCTGAGATCGACCCTTGACCTCACACTCCggccccccgcccccgccccgcctccctccttccctccgaGCTGGTTCTCAGTGCTTCTCTATCGGACCCTGACGGACGGGGCATGTCTGCAGCGGCCACGCCCCGGCCAGAGCCTTCACCCCGCCGCCCCTCTTCCTGCTGCAGAGGACTGA

Function

GO: NA

KEGG:

id description
K08784 HTRA1, PRSS11; HtrA serine peptidase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174584 lncRNA downstream 157407 3060561 ~ 3113082 (-) True G138799
TU174507 lncRNA downstream 549785 2720412 ~ 2720704 (-) True G138742
TU174503 lncRNA downstream 555801 2714377 ~ 2714688 (-) True G138738
TU174502 lncRNA downstream 562414 2707869 ~ 2708075 (-) True G138737
TU174481 lncRNA downstream 578620 2691430 ~ 2691869 (-) True G138720
TU174679 lncRNA upstream 82821 3376248 ~ 3378038 (-) True G138873
TU174717 lncRNA upstream 631740 3925167 ~ 3928618 (-) True G138906
TU174779 lncRNA upstream 782188 4075615 ~ 4076838 (-) True G138948
TU174869 lncRNA upstream 1162365 4455792 ~ 4456002 (-) True G139024
TU174870 lncRNA upstream 1172527 4465954 ~ 4466189 (-) True G139025
AMCG00002813 mRNA downstream 51251 3213625 ~ 3219238 (-) True AMCG00002813
AMCG00002812 mRNA downstream 63933 3198668 ~ 3206556 (-) True AMCG00002812
AMCG00002811 mRNA downstream 78993 3181102 ~ 3191496 (-) True AMCG00002811
AMCG00002805 mRNA downstream 89925 3169166 ~ 3180564 (-) True AMCG00002805
AMCG00002806 mRNA downstream 101985 3162801 ~ 3168504 (-) True AMCG00002806
AMCG00002820 mRNA upstream 11138 3304565 ~ 3328956 (-) True AMCG00002820
AMCG00002817 mRNA upstream 38290 3331717 ~ 3345334 (-) True AMCG00002817
AMCG00002819 mRNA upstream 85179 3378606 ~ 3379298 (-) True AMCG00002819
AMCG00002824 mRNA upstream 372022 3665449 ~ 3667197 (-) True AMCG00002824
AMCG00002828 mRNA upstream 635334 3928761 ~ 3953324 (-) True AMCG00002828
TU174506 other downstream 551070 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 2345091 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 2346255 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 2346255 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 2448898 812745 ~ 821591 (-) False AMCG00002743
TU174734 other upstream 644337 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 708223 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 3769046 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 4055384 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 4637830 7931257 ~ 7938241 (-) False AMCG00002970

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00010054 True 3775 mRNA 0.40 9 NC_007123.7 11388724 ~ 11457625 (-)
grasscarp (Ctenopharyngodon idella) CI01000161_02552972_02601762.mRNA True 1431 mRNA 0.53 9 CI01000161 2552972 ~ 2601762 (+)