AMCG00003139


Basic Information

Item Value
gene id AMCG00003139
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12723326 ~ 12723550 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003139
ATGGAGCTGCTCCTGATGCAGATGGTTGGGTTTGACACAGCATCCCCTGGCAGAGAGATCCAACTGCTGGATTGGTTTGAGCTGCCTGACGAATACCTTCTTGTCCAGGAGTGGCCTGTGACATGCCAGGACCTGTTGAGCTATGCTGGGGACCAAGGAAATTGCCTGGAGGAGGCTGAGGCCAGGAGGTTCATACAGCAGCTGGTAAAGCCCTTGCAGCACTGA

Function

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process
GO:0007634 optokinetic behavior biological_process
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003139 True 225 mRNA 0.55 1 12723326 12723550

Neighbor

gene id symbol gene type direction distance location
AMCG00003131 LOC107682932 coding upstream 15094 12701128 ~ 12708232 (+)
AMCG00003128 NA coding upstream 40904 12681742 ~ 12682422 (+)
AMCG00003125 emx2,LOC107666392,LOC107711418,LOC107733718 coding upstream 483946 12234557 ~ 12239380 (+)
AMCG00003121 slc18a2,LOC107670861,LOC107689804,LOC107715963,LOC107744594 coding upstream 569975 12134125 ~ 12153351 (+)
AMCG00003120 NA coding upstream 592421 12122044 ~ 12130905 (+)
AMCG00003130 NA coding downstream 20196 12743746 ~ 12747836 (+)
AMCG00003140 sirt1 coding downstream 146477 12870027 ~ 12875034 (+)
AMCG00003150 NA coding downstream 222254 12945804 ~ 12948577 (+)
AMCG00003149 NA coding downstream 247155 12970705 ~ 12982068 (+)
AMCG00003151 NA coding downstream 276615 13000165 ~ 13000605 (+)
G140872 NA non-coding upstream 437050 12286047 ~ 12286276 (+)
G140857 NA non-coding upstream 564575 12154813 ~ 12158751 (+)
G140738 NA non-coding upstream 1089801 11631963 ~ 11633525 (+)
G140723 NA non-coding upstream 1185372 11537647 ~ 11537954 (+)
G140694 NA non-coding upstream 1232664 11488230 ~ 11490662 (+)
G140961 NA non-coding downstream 98325 12821875 ~ 12831106 (+)
G141066 NA non-coding downstream 388187 13111737 ~ 13111936 (+)
G141156 NA non-coding downstream 837048 13560598 ~ 13560839 (+)
G141220 NA non-coding downstream 1119629 13843179 ~ 13843515 (+)
G141222 NA non-coding downstream 1121196 13844746 ~ 13844952 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other upstream 45167 12371999 ~ 12678159 (+)
G140693 NA other upstream 1235442 11486191 ~ 11487884 (+)
G140613 NA other upstream 1511215 11209573 ~ 11212111 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 1966486 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 2039714 10680771 ~ 10683612 (+)
G140939 NA other downstream 7181 12730731 ~ 12739767 (+)
AMCG00003141 LOC105923605 other downstream 155135 12878685 ~ 12882998 (+)
AMCG00003158 NA other downstream 382906 13106456 ~ 13110634 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other downstream 1001360 13724910 ~ 13743543 (+)
AMCG00003182 NA other downstream 1399233 14122783 ~ 14131275 (+)

Expression


Co-expression Network