G140857


Basic Information

Item Value
gene id G140857
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12154813 ~ 12158751 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU177186
GATCTCTGCTGTAAGCGACATGGCAAAAATGACGATACTAAAATGTGTGAATTTAGGACACTGAGGGGGAAAAGTTTTGACAGAATATGTAAACACTAAAGCACAGCCACACTAATCACCACGTCAGGATGTTCTAAGTCGTAATTATTTGCCAGATGCTATGATAATAGATGTCACcctccttttccttttattttgtaagttacCTAGCACTGACTGACTATGGCAAGTTTCTGCTCCTCTAGAAGGTTATAATTGACATTTCCCTTTTAATGAAGATCAAATATCGACGCTCACATTTCCCACGGAAATAAACAGTTCTGAAAGTTACTGCAGGGAAGTGACATTTGAAATATCCGTTTCTgtacagatatttaaatgttaacggtaaaaaaaaatatattacacttAGCGCTGTTGTTGGTTGCAGTTCTTATCGGAAACTGAACTCGGTGATTGTTCTGGTAACGGACACATCTCTGCTCATGTCTGCCGTTTCATAAAGTAGTTGATTTAGCCTTTTGCCTATGTTACCATAGCAATGGTTTTTCAGAAGTGGCACTAACTAAAGGTTAAGAATCGGAGCTAGCGAGCAGAGCTGCTTGTTCTACAAATGTCATCTCTAAAACCACTAGCTAAAGGAAGGGAGAACAGGAGGTGAACATTATTCAAGGAATGCAGCTTCAGTTCAGGTGAGAGTAATGTTTATTTCAGCTATGTACAGTAACGCATGATTACATGACCTATGTTATTATATAACATCTTTCTTGCAAAATGCTCCACTGCAGATAGCAATGCCAGACAATGttaatatatcattataataagACATGAATAATGGGGACTGACTCTGGGCACTTTGTATTGGATTGTAGGTGCACAAGTTACAGCAGCACAAGCCACACTGAAACCGCTCTTCTCTGAACTGAAATCCAAACCCTTTGGCCACGTGTTTGTCTGAAACTCACAGTGAGCGACTTAGGGCAAGCCAAATTACCATTACGAGACATCTCGAAATGCATTTCCAgacatcctcaAAATATCTGaagatttctttaaatgaattagaaATATCTccatgatcatttggcttgccatagagaCCTAAAGAAAGCATGGATATCCCCGCTCAGAGCTGGGACTGCAAGCTTCACTCTTGCTTCAGACTTACCTTTCTCTACTAGAAAAATATTGCACAAAATCTGAATATACAACATCTGTATACATTAAAAGTAGCAGCCTTGTAACGCCAGGACATCGTATCTATTGCACAAAATGTGGCTTACATTCCATCCTcctatgcttttttttttttttaaaccgtcTGATcctcttgttttctttaaaacactttttaatgGCTTTCAGATTTCCAACTGGCATGAGAGCCAGTGCAGCCAAATGGCCTCAAAGCTGCAAACAGAAAACCCATGAAGACAAAACCAAGTTTAGTTTCCAAGTGAAGGTTTTGCTTCAGAAGGgcagaaattacacatttacttCCCAGTTCAGCATCTCTGTGGCCAGGATGTCAGGGTAATACAAGTACAGTATTTGCGCACTCAAATTTCATCAGTATTGATATCAATGCTTTCTTGGGTTCCCTGTCTATATTGTGCTGTGAATATAGTGACATACATTCAATGGTATGCAAGCACATCATCTTCCACAATTGCTTAGCTTTATAAACATTCtctcaacccccccacccaccacatACATTAAATTTcccaaaatgaaacaaaaacaaactgaaatcgAACCATTTAATCATCTCACTTCTTGTGGCTTttgaatacatatacacacccattacatttatataaagagCCCTCCATATGAAAATGAACTATCAGAACAAACTGTACAAACACCTTGAGCATAAATATTCCGTTTTCTTTGTTTGGGGGCAGGTTAAATACCATAACTATGTCCtagctgctcattttaatatggcagagctctgtgtatgtacagtgcTGGACAGAATTGAGAGAACACACAGACAATCTTTTTGAAATACAGctaggaaaggaaaaaacatttagaacaACATAGTATGTTGAACTAACCTTTGGTGCCATATATGACCAATAAGATCTTTAGTAAGGCATCTATATATAGACAGTTGAAATATGATCCTTACAAACAcgttttatattaacatttatatgtTAACATTACCTTGTATATGCCCTTTGTACATGTGCATATAAAACTATTGTCTGTGTTCACTTTCTGCAGCTCCACTTCAGTAAGATTGTCCatgtgctgttttcagttttgaccACCACTGTACAATgatgtgtagatgtgtgtgcttttgtttactCACTCACTCTGAAAAAACATCTCTAGGAAACTGTTGACCTACTtcctttaaatgaaaattaatattgtCTAGCATTATTGTACTACATTCTACCCCAAAcgttaaaacaaatatacaaaacaacaacaacacaaaataaaccctAAAGCAAGAACAGcaagatatacatatattaatttgacTAAATAATAGTAACAGGTGATAATTTAAGCCAGTGTTTCTGCTATGGTAATACAGTttgaacaaactaaaaaaaactattaaataatacaaaaaaacaaaccggAAACACTGAATCGTTCCAATCCTGGTCCCGAAAACAGTTTTGGTTTCTGTCCAAAGATTTGCACATGCAATGGCCTCACAAATCTCAAGCAAAAGTGATTCCTAAAATCCTTGACAGGAAGAGAATGAAGTTCAAAAGCATTGCAATAAAAATAGCTCACAAACAGCGATTTACAGAgggattaaaaacacattgcttCAACGAAGAGAACAAATGTCAAATTTAGGATGTTAAGGTTTAATCTGTCTGGGGTCAGGGGCATGAGGCTTGTAACTTACAACCGaaaacagattaataaataaacagcttgaATTGAAATATGGAAGACAATTGAacttttaaaccattttaaattgcCTCACATTCCTCAAAACGCAAAAGGTTCAACAGAAACTTGGTACAGGCTGCTGCTGAATGTTAGAGTATTCGATTTCCCACACCTTCTGTTAGCCTATATTACAAACCACTGTGTCTTCAGTTCACAcgtataatttaaaataaatctaaggAATTGTCTGTTCCTACCATAATAGAAAGAGAACCATTTAAGACTTATATgatccataaaaataaataacagattgaCTACAACCATTTCAATGGAATTATTCTAGAGATATAATTCTTtcagttaaacaaaataacttgttaGACACAGTAAACTTCAgactaaaaaaaacatcagatgCTGCTTGTGCAGCTCAGTCTTACAGTAACCGCACAATCAGGAATCCTACTGATGCCTAAGATCTACTCTACTCTACCATCTACTCAGGGTGGGGCCCATTCAAGGACAGTGTTTTGTGGTTTGAGCACCTATATTATCACCCAAAATCACTTCTCTAAGTGATTAGCCAAACACAGGATCGTCATTCCTACAAAAGCTTTGATATCCCAGCCTATGTGATGCAGAAGAGATCATTCTCCATGGGAATACTTGACAAGACGGCTCCACTGTGCATCAACTGGACTCTTAGGTTTGTCGTTTCAAAACAGGAAGTTTGACTATTAACAGCACGGTATTTGAGTGCTGAATAATAAGGCATGGTTAGCCATTACAAgactctttctttttcatttaattggaTTGGATCCTTGTCTTGCCGTTGGTGTTTAACAGaatactgtgttttttaattccattaGCAAGGGAGGTGAGAATATGTACCAGGCCACCCGTGGAGTGTGTTCAATATTACAAGATAATATGTACAAGAACAGCTtgatgacaaaacacaaaaagtacaactacaacaacaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU177186 True 3882 lncRNA 0.37 2 12154813 12158751

Neighbor

gene id symbol gene type direction distance location
AMCG00003121 slc18a2,LOC107670861,LOC107689804,LOC107715963,LOC107744594 coding upstream 1462 12134125 ~ 12153351 (+)
AMCG00003120 NA coding upstream 23908 12122044 ~ 12130905 (+)
AMCG00003122 NA coding upstream 142797 12002034 ~ 12012016 (+)
AMCG00003116 NA coding upstream 224712 11924327 ~ 11930101 (+)
AMCG00003115 pitx3,LOC103027456,LOC100136798,LOC107699310 coding upstream 243307 11897960 ~ 11911506 (+)
AMCG00003125 emx2,LOC107666392,LOC107711418,LOC107733718 coding downstream 75806 12234557 ~ 12239380 (+)
AMCG00003128 NA coding downstream 522991 12681742 ~ 12682422 (+)
AMCG00003131 LOC107682932 coding downstream 542377 12701128 ~ 12708232 (+)
AMCG00003139 NA coding downstream 564575 12723326 ~ 12723550 (+)
AMCG00003130 NA coding downstream 584995 12743746 ~ 12747836 (+)
G140738 NA non-coding upstream 521288 11631963 ~ 11633525 (+)
G140723 NA non-coding upstream 616859 11537647 ~ 11537954 (+)
G140694 NA non-coding upstream 664151 11488230 ~ 11490662 (+)
G140692 NA non-coding upstream 673776 11480805 ~ 11481037 (+)
G140632 eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176 non-coding upstream 907535 11245256 ~ 11247278 (+)
G140872 NA non-coding downstream 127296 12286047 ~ 12286276 (+)
G140961 NA non-coding downstream 663124 12821875 ~ 12831106 (+)
G141066 NA non-coding downstream 952986 13111737 ~ 13111936 (+)
G141156 NA non-coding downstream 1401847 13560598 ~ 13560839 (+)
G141220 NA non-coding downstream 1684428 13843179 ~ 13843515 (+)
G140693 NA other upstream 666929 11486191 ~ 11487884 (+)
G140613 NA other upstream 942702 11209573 ~ 11212111 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 1397973 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 1471201 10680771 ~ 10683612 (+)
AMCG00003019 NA other upstream 2301360 9844776 ~ 9853453 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 213248 12371999 ~ 12678159 (+)
G140939 NA other downstream 571980 12730731 ~ 12739767 (+)
AMCG00003141 LOC105923605 other downstream 719934 12878685 ~ 12882998 (+)
AMCG00003158 NA other downstream 947705 13106456 ~ 13110634 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other downstream 1566159 13724910 ~ 13743543 (+)

Expression


Co-expression Network