G140228


Basic Information

Item Value
gene id G140228
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9889158 ~ 9889626 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176363
ccaaaacagccctgacccgtcgaggcatggactccactagacctctgaagctgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaagttgcgaggtggggactccatggatcggacttgtttgtccagcacatcccacagatgctcagtTGGAGATCAGGGGAATTTGGAGGccaacaaactgcgatgcactgtgtgttctgacacctttctatcagaaccagcattcactttttcagcaatttgaactacaggagctcgtctgttggatcagaccacacgggccag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176363 True 307 lncRNA 0.51 2 9889158 9889626

Neighbor

gene id symbol gene type direction distance location
AMCG00003022 NA coding downstream 96889 9791847 ~ 9792269 (-)
AMCG00003021 NA coding downstream 115811 9762896 ~ 9773347 (-)
AMCG00003011 NA coding downstream 130956 9751185 ~ 9758202 (-)
AMCG00003015 NA coding downstream 138645 9746329 ~ 9750513 (-)
AMCG00003013 echs1,LOC107601864,LOC107676592,LOC107743519,LOC107666378 coding downstream 149908 9736172 ~ 9739250 (-)
AMCG00003029 NA coding upstream 45785 9935411 ~ 9941910 (-)
AMCG00003028 NA coding upstream 52430 9942056 ~ 9945940 (-)
AMCG00003027 NA coding upstream 91584 9981210 ~ 10032434 (-)
AMCG00003041 LOC108443371,LOC108437314 coding upstream 190229 10079855 ~ 10091736 (-)
AMCG00003037 NA coding upstream 238706 10128332 ~ 10134010 (-)
G140217 NA non-coding downstream 35745 9848895 ~ 9853413 (-)
G140199 NA non-coding downstream 117651 9765653 ~ 9771507 (-)
G140174 NA non-coding downstream 148218 9740654 ~ 9740940 (-)
G140093 NA non-coding downstream 348605 9540344 ~ 9540553 (-)
G140016 NA non-coding downstream 646171 9237868 ~ 9242987 (-)
G140279 NA non-coding upstream 146552 10036178 ~ 10037857 (-)
G140368 NA non-coding upstream 332154 10221780 ~ 10339260 (-)
G140456 NA non-coding upstream 732980 10622606 ~ 10623742 (-)
G140458 NA non-coding upstream 763699 10653325 ~ 10656997 (-)
G140521 NA non-coding upstream 929143 10818769 ~ 10819159 (-)
AMCG00003017 NA other downstream 281842 9596943 ~ 9607316 (-)
G140015 NA other downstream 651428 9236658 ~ 9237730 (-)
G140006 NA other downstream 1041318 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 1394562 8485361 ~ 8494596 (-)
AMCG00002970 cj104,anapc16 other downstream 1950917 7931166 ~ 7938241 (-)
AMCG00003049 NA other upstream 412174 10301800 ~ 10331372 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 1718837 11608463 ~ 11622649 (-)
G140758 NA other upstream 1751190 11640816 ~ 11647619 (-)
G140757 NA other upstream 1804380 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 2838612 12728238 ~ 12739807 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018840 pde6b coding NC_007132.7 CM002905.2 20356458 ~ 20376607 (+)