G140016


Basic Information

Item Value
gene id G140016
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9237868 ~ 9242987 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176115
TACTGTAGTAGACCAACATACACCAATGCATGCATAAATAGATCGCGATTTCAGTAGCAAGTTGAGAATATGAAAGACATGAAGTCAGAAAGGCTATGCCAtttcttttattgatttttggTAGGCCtacttgtattgtttgttttagctTATCAGTACAGCCTATTTGCGTCAGTTAAAGTAAATGAAAGGGAacgtttattttacaaaacatgtatcattatttataattacaaatgttgTACATCTTGATATTTAGGCCTAGTTCATTTGTTATATAACTGCTGTAACATTTGTTGTGGATTCATTTTCAAGTTAAACTTCACCACTACAAGTGTTTAAAGAGAACAGCATCAAATGTGAATCAAtcagattttttcccccccaaatgtttttattgtacaaATTAGTTAACTGAATTTGCCATTATAGAAACCGATAAGGTAATTTAAtggtacattttgaaattgttatACAAATCCCAATATTTCCTCTaagttatattttaagtttCCATCCCCAAGTATGATGCACAATAAATCGATATAATTTTTCAGGGGGTGTGATTATCAAAACTGTTGACTGGATTCAGAGAAACCTGTGTGATGTGACTACACCTGTGTAGAATCTgcatatcaaatacatttgttgtacACTAAAAGAAAGATTGAATAGGAGAGGGAGACAATTTAAGAAATCTAGACATGGTAGAGTATTTGATTGGTTTTATCATTGTATTTAAGGCATACTTTTGTACTTATAACAGACAAGGTAAAAATATTTAGTATGAAAGTGCAGCAAAGCACCTTTGAGAAGAATACAACAAACTATTGGACACTCACTATTGCAAAGATTTCTTTTTCAATGGTTTGTTTTGACCTCTACCCAATATGCCAAGTTCTCCAAAGTGTTGAGCACAATATCAGCCTACATTGCAGAagcatgtttttgtgttaataATTCAAGTTTGAATTAGTGTTAAGTCATTGGTAAACATGATAGAAAATGAAGTCTAATAGCCAGTTCTGCAGCAGTGTTTAAGCAGAAGACACCTACATTTGTGTGTTGTAAAGTCTGATCAACCCAGGTagtcaaaatacataaattcttAATCTGGAATGtcaaacatttaatgaaaaattgaaacCCATTTTGGCAGTTGATGAATATGGGACACAAAAGCTCTGATTTATAAAAGTCACAGAATTGTTTGCCTTAATTAGAAGAGTTACGATCGGATAATTTGTGCCAAAGGTATGTAACCTCAAACTGGAATTTAGAGCTTAAATGCTAGTGTTAGTCCATCTCCTACAGTTAGCATGCTAACATTGACCCTGACATCTCTATAAATCTTCTTATTTAGCTTGTCAATGCATTGCGAGTCCAGATCATCTGCTTCTGGGTTCAAAACCCTTCCGCTCCAGAGCATCAATGGCTATAATTCCTCCTTTCCTAATAAGCTGCAAGCACTTCTCATAATAATGGTCATAATTCTGTTTGTCAGCATCGATAAAGGCAAAGTCAAAGGACTCTGCTTCACCGGCTGCTAAAAGATCATCTGTTAGGAgagaaaagttatttatttttctttatctcaGCCGGCGGTGAATTTAATGCATATAGTGTGCATGGTTCTAAGCTTGATGACTCAAGAGACTGCacctggattttttttaaaagggaaaataatgtGCATGAAACTATCAAGATGACAATTAGAATATTTGTGAACTGCATAACTAAGTCTGAACCCACAAATAGGTTGAAAACTTAAAGAACATTTACTGGACATtggttaaaaatgtaacaattaccGAGGGTTTTCAAGGCTGGCTGTATCCGTAGGTCGATTTTGTGCTCAACTCCTGCCttaaagaatgaagaaaagatAGAGGCCAGTTACACTTCAGGGATTCACACGAGTTTTCTTGTCAGGTGGGAAACACGCTGAGTTTGGGACATCAGAATCCCTGCAAACAGGGTCAGTGTAGATCTGTGATCTATCCCAAGCAACACACAGACTAGAAGAGTGATTTGGTTTGTTCTTTAAATGAGGTGCAGGGTCAATTGCAACCTTCACAGAGAGGCAAGCAAGTCTGGCTCATGCACAGGCAGAAAGTGCTGCAGAAACCTTCAGCTTACCACCTCGCATGCTCTATGCTGCTAGTAAGGGCCTATGGGCAGACAGCTGGCATCCTATACCTGCAGTACAGGAAGTCAAAAAGGACAAAAGTATGTATTCACTGTACATTATTGTGGTGGAGGTAGGGGGGTTACAATATGAAACCATTTTACGATTTCCTTCCTGTAATTTGTGGGATTAGTATTCAGATGTTACATTAGCAAGCCTATTATTATTCAATCCTATTCAAAGGAGgtccaaaaatgaaatatttgatAAACAAACCCAAAGAAGCCAAACACATGGTCTTCAATCAGTAGGTAATGGGAGATCCAGAGGGTGTGAAAAAGCCCAAAGAAAAGGTTCTAGTGCACTATTCAAGTGGTCTACATTTATTATGGAGAGAAAATTTCTTCCTACAAAAGAAAGAGTGCTTCGTGAGTTCAGATAATTCCATCTGGgggatgaaaaaacaaaacgggaGATGGACTGCTGAAGGGCAATGCTGACAGAGGTTTGTGGGCAGGGTGACAGCAGCATGATTTACAAAGTGAAGCAGTAATGGCAAAATGGTCTTCAAATCACAGAGGGAAACTGCTGGAGACATAACTCATTCTGTGAGCTGCAGCAGTGTGcctacaaaatgtaaagtgcaTCAATGAGTATTAAAGGGCTTCTCAAAATCCAGTTAAGGAGCTTGTTAAGAGGATGTGTGGAAAGGATACAGTAAACATGTCATAATGAAAAGCACTAATGCAATTGCAGCAGAGATCATCcataaaacagtttattatgTGTTGTACTACGTTTCTATCCGACAGTGAATGACCTTCCTACAGTTACTTCTACCAGAATGCGACATTCAGAATTTTTAAACACGTTGTTCTCTTTCAGTCATTTTGGATCTCCAAGAATTGTatccattttaaaaggaaaaaaaaaaggctcgACAGTCTCACTTGACAAGATTAAGATTGATCGTGCTTTGCCACCCTTCTATGGCAGATtgataaagattttttttcctctctctcatcACTGTTAGTAGGcatttgatcaaataaaaaacaaaaaggtgaaaCTCTCCAaaattctctttttaaaaacctAAAAAGGTACTCCGTTTTCTAGAAAGTTTTTGCAATGTGtaacaattcagttttttttattcacttttttcccctATATACTTCTAAGATCAAGGACTTTGACTGCCATATCCTTCATCATGCTCGTCATTGGACACTTTAAATTTCACTTGGAATTTGACCTTGTATTCTACTTTGAATAGCTCTTTCCCCTATTTTGGGTTAGTTTcttgcagaaatgtttctgtatagGCTACCTGTTACAAGACTGAGATGTCTGTCCCTTCCTGTAGTCAGGTCTCCTACCAGTATGATAATCGGATCCTGCAATTTTAGGTGAATACTCTAGAGAGGAATGCTTTTTCTGTTCACAAGTCTGTTTTACATAACTCTGCAAACATTCCAATTTGTCAGATAAACGGACAATCTTTCCCTGTATTCAGCAATCTGTAAGGGCTATTACGACCAGTATGCCGGAGATGGACTTTATAAATTAGAGGTTTCAAGTTTGTCTACCAAATCTGCTAGGaatctactgtactgtacagcatGTTACCATGCATGAAACCATACAAACATTGTAACTAACTGGCAATTCCTTAATCTTTAGTTCTGCATGCTTGCTATTCAAACTTTGATTCTTGCATCTCCCTTCCTATACCTCTTCCATTGCATACTGTATTTGTTCTCCAATGCATTTCTGACTGTTCAGTTGTATTCCACATCTAAACAAGCCTTCCAGAGTATACTTCTTAAAAAGGAGACTGGACTTACTTCTTTCCAGAATGGCCTTCCCATGTTGGGTAAGGCTTCACTGATATCACAGGCCACAACTCGTCCATCTTCTGGCAATGTGAGTGCTATATTTAAAGCATTGTACCCTGTATAGACCCAATTTCAAGTGCTTTTTTGGCTTTAATTAGCTTTGCTAGGTTGGCCATCAGCTGGGATTGTTCACAAGCTACCATCATCCCACTGAATCGATCTTCTAGGGTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176115 True 4208 lncRNA 0.37 3 9237868 9242987

Neighbor

gene id symbol gene type direction distance location
AMCG00002993 NA coding downstream 270719 8910435 ~ 8967149 (-)
AMCG00002988 NA coding downstream 657495 8571588 ~ 8580373 (-)
AMCG00002987 NA coding downstream 666961 8570218 ~ 8570907 (-)
AMCG00002985 zcchc24,LOC107564348,LOC106577169 coding downstream 694908 8529195 ~ 8542960 (-)
AMCG00002986 zcchc24,LOC108245402,LOC104967378,LOC105029870,LOC103133498 coding downstream 729516 8505689 ~ 8508352 (-)
AMCG00003001 vdac2,LOC108444242,LOC107747461,LOC107582506,LOC107690181 coding upstream 31226 9274213 ~ 9281237 (-)
AMCG00002999 samd8 coding upstream 41562 9284549 ~ 9298719 (-)
AMCG00003000 kat6b,LOC102792766 coding upstream 82472 9325459 ~ 9346898 (-)
AMCG00003006 adka coding upstream 128386 9371373 ~ 9384002 (-)
AMCG00003003 LOC103355368,LOC107084594,LOC107666490,LOC107601874 coding upstream 191073 9434060 ~ 9440740 (-)
G140014 NA non-coding downstream 1566 9236022 ~ 9236302 (-)
G140009 znf503,LOC107708443,LOC101070189 non-coding downstream 81306 9150816 ~ 9156562 (-)
G140007 NA non-coding downstream 304899 8932770 ~ 8932969 (-)
G140005 NA non-coding downstream 387309 8849669 ~ 8850559 (-)
G139960 dlg5 non-coding downstream 619767 8617435 ~ 8618101 (-)
G140093 NA non-coding upstream 297357 9540344 ~ 9540553 (-)
G140174 NA non-coding upstream 497667 9740654 ~ 9740940 (-)
G140199 NA non-coding upstream 522666 9765653 ~ 9771507 (-)
G140217 NA non-coding upstream 605908 9848895 ~ 9853413 (-)
G140228 NA non-coding upstream 646171 9889158 ~ 9889626 (-)
G140015 NA other downstream 138 9236658 ~ 9237730 (-)
G140006 NA other downstream 390028 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 743272 8485361 ~ 8494596 (-)
AMCG00002970 cj104,anapc16 other downstream 1299627 7931166 ~ 7938241 (-)
AMCG00002945 NA other downstream 1885047 7348811 ~ 7352821 (-)
AMCG00003017 NA other upstream 353956 9596943 ~ 9607316 (-)
AMCG00003049 NA other upstream 1058813 10301800 ~ 10331372 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 2365476 11608463 ~ 11622649 (-)
G140758 NA other upstream 2397829 11640816 ~ 11647619 (-)
G140757 NA other upstream 2451019 11694006 ~ 11733762 (-)

Expression


Co-expression Network