AMCG00002999 (samd8)


Basic Information

Item Value
gene id AMCG00002999
gene name samd8
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9284549 ~ 9298719 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002999
CTGCTGGGCTGTCAGAGCATGTTTGTAAGTCGGGCAGCGATGGTGTGCAGCAGCCCTCTCACTCCTCCGAGCTCCGGGACGCCTCTCACAGCAGCATGTGAGAAGATTGGctcataaattataattaacttAGTGTATCGAATGAGCGAACTGCTCGGGTAGAGTGTATGAAAATGTCTGGGTGTCAGCTAAACATTCGCCGCTGGACGACGAAGCACGTGGCCAAGTGGCTGAAGGAAGAAGGCTTCTGCGACTATGTGGACCTCCTCTGTAACCGGCACAGGCTGGATGGCACCTCTCTGTTGACTCTGACGGAGTACGACCTCCGCTCTCCCCCTCTGGAGCTGAAGGTCCTTGGGGACATTAAGAGGCTCATGGTCTCCATTCGCAAGCTCCAGAAACAGAACAGTGACCTTCTGGAGGAGCTGGGGTACACTTGTGATGGTTGGCCCGCGGCGTCCGGGAGCCACTCTATGCAGGGCGCTGGAGACTGGCTGTGTAATGGCGACCCGGTGCGAGACTGTGTCAGCGCGGTCACGAGCCTGAGCGGGGAGCAGTACCACCAGTACACCAATGGGAAATACAAACCACACACACGGAGACTGGACCCGGAGTACTGGAAGACCGTCCTGAGTTGCATTTACGTCGTGTTTGTGTTTGGGTTCACGTCCTTTGTGATGGTGATTGTGCACGAGCGTGTGCCCGACATGCGCACCTACCCGCCATTGCCAGACATATTCTTAGACAGTGTACCCAGAATACCTTGGGCTTTTGCCATGGCTGAAGCCTGCGGTGTTATTCTGTGCAATATATGGTTGTTGGTGCTGCTTCTTCACAAACACAGATCGATTCTCTTGCGCCGGTTGTGCAGTCTCATGGGCACGGTGTTCATGCTGCGCTGTGTTACAATGTTTGTCACATCTCTCTCAGTGCCTGGACAGCACCTACAGTGTTCAGGAAAGATTTACGGTGACATGTGGGCAAAGCTGCGCCGAGCTGTGGCCATCTGGAGTGGTTTTGGGATGACCCTGACAGGCGTCCACACTTGCGGCGATTACATGTTCAGTGGTCACACGGTCGTCCTGACCATGCTGAACTTCTTTGTTACAGAATATACACCAAGAACCTGGAATTTCATACACACACTATCTTGGGTTTTGAACTTGTTTGGCATCTTCTTCATCCTGGCTGCTCATGAACACTACTCCATAGATGTCTTCATTGCTTTCTACATCACCACAAGACTCTTCCTGTACTACCACACACTGGCCAACACCAGGGCCTACCAGCAGAGCCGCAGGGCACGGATCTGGTTCCCCATGTTCTCGTTCTTTGAGTGCAACGTCAACGGACCCGTGCCCAATGAATACTGCTGGCCCTTCTCCAAACCTTTCATCATGAAAAGGTTAATTGGGTAGCATGGTAATCCTCCAGTTATCGCCCTTGGAGCAATTTCATTTTGCAGGCCCTGGGCTAGATGTTAACCTCCGAATGACAAATCCGTTACGATGGTGCTGCATATTCATCTGATTTTGTGAAGTCAAGTGATGGTGACGATCTTTGCAATAACATCATTCTATtgaaattgccattttaatcCTAATAATGCTGCAGATGAGAACGGGGCAGAGTGGGGATCCTGTGTTCCTGTGGTTAACAGTTGGAGGGCTTTCTACGTCAGACTGTACAGAAAACAGATCGAGGGCATGGAAAAGTTTCTGTCTGGtgtctttctgtttaaaaacCTACTTGTCTGCTTGGAAAGGCTGAAAAAAGataagattttcttttttttaatcttagaTTGTCTAAAAGTATGGAAATTATAACAGGAGTACAATCTCCCCTGTGGTCTCTAAATGGGGTTAGAATGATGTAGTATTTGTGTGGTTAATATTGTAATTGGGTATAAGGTGAGGGTCTTAGTGCTATGTAATTGTAATGAGCTTAACCCATGTAAAGGAAAATGCTACAGCATCCTTAGAAATATTGAAATTCTGTGTAAAAGGTGGGGTACTACTAGAAGGATTTGTATTTGTACCAATTAGCCTACTTTTCCAGTGTCCAGGTTGAATTTTAAACTGCTGCTTTAATGAGGgtaatttaatttcctgtctTTGTTTGGACCCATGGTAGCAATGTACAAGCAGCTGACAAAAAGTCTGGACACAAAAAGGTTACCGATTTCaaggtacatttgttttctttaagacCGCCAATGTTTGgaataaaaaactaacaaaaaagtCTTAAGATATTATTCCATTTGCCAacaaagctttattattataaatgttttctttacacTAACAACATTCGAACCCGCTTATGTGGAATTTTGCACAGTTCTGGTTACGGTCTTCACTGTAATGTAGGCTTGAACAAAGAAAGCTAAGAAATGTGATCCATTTCGAAATAAGTTTACCAACAGTTTACTAAACAATTGAGTTTTGACATGGCTAGAAGAAATACAATGAAcgtcattaaaatatatttacaaatacgTACAAATGGAAGGAATTTGTATGAGGAAGCTTCCAGAGTTCCTTTGAGGTAATTTAGTCACAGTaaaaattgtacatttaaacatgtgACTTTATTTGCCTTTCCaaatgttcattattttataaaaaaaatatttcatgtCTGTGTCTTAATTTATAGAGTATTTTTAAagtctacatttttatttaaatttgtaaaaaatGGTTATTTGCTAGAAAAGAGAGGTTTGACATTGGTGCACTgagtaaattgtttttttagttaaagTATTTGCTCTGTGTTTAAGGCTCAATGTTGCATCGGCGATTGGATACAGTTatgcaaaacaagaacaatactAAGTGAGATCGAAAGTAATCTGTAGTCCTGTTTAATCCtaattttatatgtatgttCAATGTATCTTGTTAAACATCTGCTCCTCAATGCCCACTGTATTAATGAATAagtgaatattgcacaataaactatacaaataataGTATAACAAAGCCATGACATTAGTtacatagatttattttaatcaatattaattctGGCTGATTCTAACTGACCCCTATTTAGGAAGGGTTTTCATTGAGTATTATAAGATGCATATTTGGAAGAATGTGTGCTAACTATCGCATAACAATGTCTCAAGAAGGACAATAATGAGAAAACATTTACTGTACTCTGGAGCACATGTTGAAATTAATATAGCAAATACtacactattttaaatgtaatttgcttttgATTACTTAGCAAAACCCTGAGTGTAGAAATAATTATCAGCTGATGTAAAATTCCTTTCCACATCAAAGAGTGACACCATGGTGAAAAGTATGAGAATATAAAACTATCATTTCCTAAGGCAACTTACTTACAACACTGTAATACTGAATACTGTTTTAAAGGTAAGCCCAATTCCTAATGACAGTTACtattatacatgttttgtgtCACAGATCTATATGTATACTTGGAAAATCCACAAATGAAGGCCTTCCCCAACTACAACTAAAGTATTGTCAGTGATGGCAAGCTACAGTTTGTGCGTTCTgaaataaatgccttttttgttttctgccatGCTTCACTGTTCTTGGTCAAGTTTTTTTATggggttttctttttattaagagcCCAGATTAGCAATACCCTCACACTCTGCCtaagttttaagttttacaCTAACCGTTCCTAATTTTACATCCGAGTAATTAGTATGTACcctcattaaatatttacaatttcaCTGATCAATCAACATTGAtctaaatatatagatatgtagtgTATTTGACTGATAACTCTACTTACCTCAAAGTCACAAAAGCTATTATTGCAGCATTACTgctttaattacatattaatatcaGAGATATTGTGAGCATGGCAGAGTGCCTTAGATATAAAGAGGAATCTGTGAATCCATTTAGCTGTGTATTTAGTACTACCTTTTGCACTTTTTTATATCTAATGCAGTGCTATTTAACTTCCTTTTAGCCTATTGCTGATGTTAGAAGaagcaattgtattttaatatttggaaAGCTTACTTTTTTCAGGACCGTATATTAACATAGACTTCTAGTGTTTGTATCATAGTTATATTAAAGTACTTGATGAATTCTATAAAACGAGTTTTGACTAAGGTGACCCTGACATAAAGATGGTTTTGGGGTCATGTTGCTTCTCTAGGGTGGTATAGCCCCCAGGGAGActacttgcattttatttaaggcacatattttcaaatgccttGAAAGTACATCATCCTCTCTACTCAAAGTGCTTTTAATAACTTTGGAATGattcactttttattaaaatacaaattttaaaaggGGAAAGAAGGATTCCTTATTACCGTCCTGGCCTGACTGCTGTACTTGAATAATGAAAGGGATTGTTGCACTCCTCACGTTCTCGTTCTTCAAATTTTGGTGTCATGCATTGAAGTGGAAGGAACTTTAGTGGTACTACAAGAAAATCTTTGGTAGTGAACTATGGTTTAACTTTGGTTgagctataaatataaaatgcaaagttcTCTCGTTATATTAAAAGTTTTAACTGCCTTTGTTATATTTActaaactgcacatttcaattattttgtatgttttatctttttctttaaatgtttacaaatatgtCTGTGCAGTATTCGATTGGCCTGTAGATGTATGTCAATAAGTTTACGGTGACTGTTGCAGTATTTCACTTGTTAGCACATTTAGATGATTGGAAACATTTTGGAGCAATACTACTGTACACTACTTTGTTTATGTTGCAGTTATCTAGTGGAGTGTTGTCAAAACTCCCAGCAGAACACAAATCTAAAATTCACCATTTTGGTTGCTTATATAGTATACATGTTCTTCTTTTGTCTTCAATACAAAGATATGTCATTGCCTGCAAcgtaaataacattttaaatgacttatatatgtaaaatgtatatatttacattttcaattaaaaaagaaaaaaaaggtataacactttaaaaatctAGCCTTTATTAGTGAAGCTCTCTCAAGCGCCTAGTGTGCTAAAGGTTACATTGCATTGTTCAAAGGTACAGTACTATTGATTCCTGTACGttgttgcatttaaaactgGTAAGGCGGctgcaataaaaaacatacttttttcaAA

Function

symbol description
samd8 Predicted to enable ceramide cholinephosphotransferase activity and sphingomyelin synthase activity. Predicted to be involved in ceramide biosynthetic process. Predicted to act upstream of or within sphingolipid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane; integral component of endoplasmic reticulum membrane; and integral component of plasma membrane. Orthologous to human SAMD8 (sterile alpha motif domain containing 8).

NR:

description
PREDICTED: sphingomyelin synthase-related protein 1

GO: NA

KEGG:

id description
K22697 SAMD8; sphingomyelin synthase-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002999 True 5150 mRNA 0.38 6 9284549 9298719

Neighbor

gene id symbol gene type direction distance location
AMCG00003001 vdac2,LOC108444242,LOC107747461,LOC107582506,LOC107690181 coding downstream 3312 9274213 ~ 9281237 (-)
AMCG00002993 NA coding downstream 317400 8910435 ~ 8967149 (-)
AMCG00002988 NA coding downstream 704176 8571588 ~ 8580373 (-)
AMCG00002987 NA coding downstream 713642 8570218 ~ 8570907 (-)
AMCG00002985 zcchc24,LOC107564348,LOC106577169 coding downstream 741589 8529195 ~ 8542960 (-)
AMCG00003000 kat6b,LOC102792766 coding upstream 26740 9325459 ~ 9346898 (-)
AMCG00003006 adka coding upstream 72654 9371373 ~ 9384002 (-)
AMCG00003003 LOC103355368,LOC107084594,LOC107666490,LOC107601874 coding upstream 135341 9434060 ~ 9440740 (-)
AMCG00003004 vcl,LOC108426801 coding upstream 202526 9501245 ~ 9524893 (-)
AMCG00003005 NA coding upstream 247279 9545998 ~ 9554667 (-)
G140016 NA non-coding downstream 41562 9237868 ~ 9242987 (-)
G140014 NA non-coding downstream 48247 9236022 ~ 9236302 (-)
G140009 znf503,LOC107708443,LOC101070189 non-coding downstream 127987 9150816 ~ 9156562 (-)
G140007 NA non-coding downstream 351580 8932770 ~ 8932969 (-)
G140005 NA non-coding downstream 433990 8849669 ~ 8850559 (-)
G140093 NA non-coding upstream 241625 9540344 ~ 9540553 (-)
G140174 NA non-coding upstream 441935 9740654 ~ 9740940 (-)
G140199 NA non-coding upstream 466934 9765653 ~ 9771507 (-)
G140217 NA non-coding upstream 550176 9848895 ~ 9853413 (-)
G140228 NA non-coding upstream 590439 9889158 ~ 9889626 (-)
G140015 NA other downstream 46819 9236658 ~ 9237730 (-)
G140006 NA other downstream 436709 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 789953 8485361 ~ 8494596 (-)
AMCG00002970 cj104,anapc16 other downstream 1346308 7931166 ~ 7938241 (-)
AMCG00002945 NA other downstream 1931728 7348811 ~ 7352821 (-)
AMCG00003017 NA other upstream 298224 9596943 ~ 9607316 (-)
AMCG00003049 NA other upstream 1003081 10301800 ~ 10331372 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 2309744 11608463 ~ 11622649 (-)
G140758 NA other upstream 2342097 11640816 ~ 11647619 (-)
G140757 NA other upstream 2395287 11694006 ~ 11733762 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location