G140009 (znf503,LOC107708443,LOC101070189)


Basic Information

Item Value
gene id G140009
gene name znf503,LOC107708443,LOC101070189
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9150816 ~ 9156562 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU176107
tccagaatacatacaaaaaataccaATTCTCTTTCCATGGTATACACcttaaaaataattgcaatttaaaattataaggACAAGTTGGGATTTTAGTAACAAACatgcatgtcatttttttttctgttcaaggAGACATTAAATAAGAACGTACAATACAATCATagcaatttcaaataaacatcgAAAAGAAAACCCCCTATGTTCATTAGTATTCTAGCATGGGTGTTTCACTTTACCTAGAGAGCTCAGTTTAAAAGTAATGCacttttgagttgtttttttaatcattattctttatattattgTCCCGCTTGAAgctaacataaataaatacagtgtgtCCACGGATCCAGTCCTTAAGTGGACAGTTAATAGAAAAgtcattatatttgtattttttcctataAATGTGAGTTAGTCTGTTTTACTGGTATCCCAGTGCTGATGCTGTGGTCAGTCTTTGTCCGTACAGTGCATAAGGGGAGTAATATGGTCCAGTGGCCGCGGGTACAGGGACTGGGGCGCCAGGAGTGGGCAAGGGGCTCTTTGAATAAGGGTGGTAGCGGCTGCTTAGTCCTAAAGCATGGTGAGGGCTCCGAAGTGCCAACGTGCTGGGGCTGCCAGGGCCTCCTGTGGGGGGCATGTGCATGTGGCATGCCATGGCTGCTGCGGCAGCACTGGCTAAAGAGGACGAGCTGGGGTAACCCGAGATTAGTTTCTCGGTCCCAGTGAAAGCTGTGTGGGTCCGCAAGTGGTTCAGAAGTTCTTCAGACGAGGAAAACCGCTTATCACAAGGTCCATTGGCCGACACCCAGTTACAGACGTGGGGCAGGGGATCATTTGGGAGCATGAAACCGTAAGGGTAGAGAGGGTGTCCAGCAAAAGACGGAGGCGAGGAGTGGACGCTATGCAGGGGATGCGTTGGGTAGACCAGCGGGTATCCGGATTTGAGCGCCGCGGCTGCAGCAGAGTCGTGCGTACAGGAGGCACTGGCCGCCCCGGCCAGGTGGCTGGCGCAGTGGTAGCTCAAGCAGTAAGGGTCTCTACACAGGCTGGCAGACATGATGGATGGCGGCGAGGCTCCGGCTAAAGGGCTCGATCCGGCCTTACTGCAGCCTAGTGAACTGGCGGCGGCCAGCTGTGCATTAACTAGACTGTTAGACTTAGTTGGATCTAAAGTCACTCCGTGTGGCAGGAACTGCGGTGGGTAGCCGGCATAGGCCCCGGCCAAGGTCCCAGGGTAGGTCATGCCAGCAGGGGGAAGTGGGAAAACAGTCTGACCGGGCTTATAGGGGGAAACGGGGGCTACAAGTCCAGATCCGAGAACGGAGGCCGAGGAAGCCGAAGATACGGATGACGAGTCTGAAGTGATAGGTTTGGATCCTGAGGTGGTCTCCTGGTGTTGGTTGACCTCCACGTTAATTCCAGCACAACTAACGCTTATCCTGCTGTGGCTGATGCTCGTGGTCCCAGAGCCCTCGTTGGAGCTGCTTTTGTTGCAGTCGGACTCTTTCTTGTCCTGACTGTCTCCCGATTTGCCCTCCGACGGCAGCGGAGACGCGGAGGAGCTGGAATTCGGGCTGCCTGTCCTTGGAGTAAATGGCTGGCAGGTGGCGCTAGGGACACGGAAACCAGATTTCTCTCCACCAGAGCTCCCGGAGGATGCGTCCTTCTTCTCGGATGGCTTGGAggaaataaaaaaaaaagaaggggcTGCCAGATCTTGGAGAaaagaagtttaaaaatgcCTTGAACTATTCACCGTTGAGATGGCTAATCAGTATTGAGGCTCCAGGGCAATCGGGCAGCTTTTCAATGCGGTTTTCCTTTCATCTCAAGCTGGATGGAGGCGCTCAATTAAAAGCCTATCAGTTTGTCATCTCAGAGAGGAAGAAAACCTGGAGTGGACCTGCTGGAATTGAgttatttccaaattaaaagaatgaaaagatCCATGGAAGTTTCcac

Function

symbol description
znf503 Predicted to enable metal ion binding activity. Acts upstream of or within embryonic camera-type eye morphogenesis and hindbrain development. Located in nucleus. Is expressed in several structures, including external yolk syncytial layer; mesoderm; nervous system; neural tube; and optic cup. Orthologous to human ZNF503 (zinc finger protein 503).

NR:

description
PREDICTED: zinc finger protein 503

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU176107 True 1971 lncRNA 0.50 3 9150816 9156562

Neighbor

gene id symbol gene type direction distance location
AMCG00002993 NA coding downstream 183667 8910435 ~ 8967149 (-)
AMCG00002988 NA coding downstream 570443 8571588 ~ 8580373 (-)
AMCG00002987 NA coding downstream 579909 8570218 ~ 8570907 (-)
AMCG00002985 zcchc24,LOC107564348,LOC106577169 coding downstream 607856 8529195 ~ 8542960 (-)
AMCG00002986 zcchc24,LOC108245402,LOC104967378,LOC105029870,LOC103133498 coding downstream 642464 8505689 ~ 8508352 (-)
AMCG00003001 vdac2,LOC108444242,LOC107747461,LOC107582506,LOC107690181 coding upstream 117651 9274213 ~ 9281237 (-)
AMCG00002999 samd8 coding upstream 127987 9284549 ~ 9298719 (-)
AMCG00003000 kat6b,LOC102792766 coding upstream 168897 9325459 ~ 9346898 (-)
AMCG00003006 adka coding upstream 214811 9371373 ~ 9384002 (-)
AMCG00003003 LOC103355368,LOC107084594,LOC107666490,LOC107601874 coding upstream 277498 9434060 ~ 9440740 (-)
G140007 NA non-coding downstream 217847 8932770 ~ 8932969 (-)
G140005 NA non-coding downstream 300257 8849669 ~ 8850559 (-)
G139960 dlg5 non-coding downstream 532715 8617435 ~ 8618101 (-)
G139937 NA non-coding downstream 655519 8494854 ~ 8495297 (-)
G139902 rps24,LOC106591086 non-coding downstream 916532 8230369 ~ 8234284 (-)
G140014 NA non-coding upstream 79460 9236022 ~ 9236302 (-)
G140016 NA non-coding upstream 81306 9237868 ~ 9242987 (-)
G140093 NA non-coding upstream 383782 9540344 ~ 9540553 (-)
G140174 NA non-coding upstream 584092 9740654 ~ 9740940 (-)
G140199 NA non-coding upstream 609091 9765653 ~ 9771507 (-)
G140006 NA other downstream 302976 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 656220 8485361 ~ 8494596 (-)
AMCG00002970 cj104,anapc16 other downstream 1212575 7931166 ~ 7938241 (-)
AMCG00002945 NA other downstream 1797995 7348811 ~ 7352821 (-)
AMCG00002935 LOC106589936 other downstream 2084466 7062473 ~ 7066350 (-)
G140015 NA other upstream 80096 9236658 ~ 9237730 (-)
AMCG00003017 NA other upstream 440381 9596943 ~ 9607316 (-)
AMCG00003049 NA other upstream 1145238 10301800 ~ 10331372 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 2451901 11608463 ~ 11622649 (-)
G140758 NA other upstream 2484254 11640816 ~ 11647619 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005891 NA non-coding NC_007124.7 CM002897.2 17464216 ~ 17466820 (+)
grasscarp (Ctenopharyngodon idella) G683501 NA non-coding CI01180000 null 5873205 ~ 5875199 (-)