AMCG00003441


Basic Information

Item Value
gene id AMCG00003441
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 3499756 ~ 3505403 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003441
ATGGGTCATTTAAAGGGTGGGAGGACCAGGCTGCCCTGGGCGGTCCTGGCTCTGTGCCTGATGTATTCTGCTGAGGGCCTGCTGCCTCCTTCAAAGGACGACCTGAACCTTCACTTTTACTTTGCAGAACTATCACTTCTGGGAGAGAAGTACTTGGACCAACAAATAGAGAACGCCATCAATGGGGTCAAAGAAATGAAGACACTGATGGAGAAATCTGGAGACGTTCACAAGAGGTTTCTGAACACCTTGGAGGAAACCAAGAGTCAAAAAGATGACGCTCTGAAGACGGCCCGTGAGGTTGAGACCAAACTGAACGCTGAGCAGGAAGTGTGCAATGACACCATGCAGGCTCTGTGGGAAGAGTGCAAACCCTGTCTGAAGAACACCTGCGTCAAATATTACTCCAGGACGTGCAGCAGCGGCTCAGGCATGGTTGGGAGACAGcTGGAAGAATATCTGAACAGGTCGTCCCCAATCTCCATATGGATTAATGGGGAAAACATGGATACCCTCCTGGAAGAGGACAAAGACCAGAGCAAGCAGTTTGAGGACCTGGAGGAGCGCTACACCGAAGTGGTTGATGGCGTTGACAGCATCTTCATTGACAGCATGAAAGTGTTCGATCACATGCACTCCTTCCACCGGCCTTTCTTCAGCAGCCATTTCAGGATGCCCAGCCTCTTCAGCGGAGAGGAGAGGAGCGGACTGAGGTCACGCTTCTACAGGTCCCTCGACCGTGGCTTTCATGGCTTCCACCGCATGTTCCAGCCAATGTTCGACATGGCCCGCAGCATGTTTGACTCTTTTGAGCCCTTTATGGACAGGGAAGGAGGTTTCGACGCAAATTCCAATTCTTCTAAAGATGGAAGTGTTAATGAAGACGTCCTTGTGACCCGACCATTTGGTAATAACCGCATGACCTGCAGAGAAATTCGACGCAATTCTGCAGGCTGTATCAAACTACGAGatgaatgtgaaaaatgcaAAGAGATCCAGAATATCGGTAATgaTAACCATTCTCCCCTTCCTTCAGACTGCTCCGGCAAGAAGCCACTGGAGGGCCCGTTGAAGGAGGAACTGGAGAAAGCCCTGGCCATGGCCGAGAAGTTCACTCAGGAATACAGCCGACTGCTGAAGACATTTGAAGAGGAGATGTTCAATACGTCCAGCCTGCTGGACATGTTTAACAAGCAGTTCGGATGGGTGTCTGCCCTGGCCAACCAGACCAAGAGAGACGGGATCTTTCAAATCAAGACGGTCATTTCGAGAACAACTGAGTATCCTGACAAGCCAGGAGACACCGATATTTCTGTTGAGCTGTTTGATGCCCCCCCAATGACCTTCACAGTGCCTGGGGACATCCCTTGGAATGACCCTAAATTTTCAGAGTACGTGGCCCAAGAAGCTCTGGAGCGCTACAAACAGAATACCATGTAA

Function

GO:

id name namespace
GO:0008219 cell death biological_process

KEGG:

id description
K17252 CLU; clusterin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003441 True 1440 mRNA 0.50 7 3499756 3505403

Neighbor

gene id symbol gene type direction distance location
AMCG00003442 ccdc25 coding upstream 71466 3415214 ~ 3428290 (+)
AMCG00003438 LOC107602173 coding upstream 103278 3356883 ~ 3396478 (+)
AMCG00003434 NA coding upstream 296674 3189095 ~ 3203082 (+)
AMCG00003433 NA coding upstream 314927 3178253 ~ 3184829 (+)
AMCG00003432 NA coding upstream 339942 3159058 ~ 3159814 (+)
AMCG00003446 NA coding downstream 68378 3573781 ~ 3575615 (+)
AMCG00003445 mtmr9 coding downstream 84933 3590336 ~ 3608951 (+)
AMCG00003448 tdh,LOC106571022,LOC107723287,LOC103024478,LOC107561940,LOC106608345,LOC107589050 coding downstream 108181 3613584 ~ 3620349 (+)
AMCG00003450 pinx1,LOC107746133 coding downstream 137224 3642627 ~ 3657790 (+)
AMCG00003447 LOC107736623 coding downstream 192920 3698323 ~ 3704894 (+)
G515 NA non-coding upstream 133413 3339846 ~ 3366343 (+)
G454 NA non-coding upstream 441555 3006968 ~ 3058201 (+)
G445 NA non-coding upstream 540325 2957218 ~ 2959431 (+)
G443 NA non-coding upstream 590314 2907642 ~ 2909442 (+)
G431 NA non-coding upstream 688204 2811314 ~ 2811552 (+)
G642 NA non-coding downstream 470350 3975753 ~ 3976039 (+)
G646 NA non-coding downstream 581493 4086896 ~ 4090319 (+)
G684 NA non-coding downstream 791156 4296559 ~ 4374939 (+)
G690 NA non-coding downstream 821250 4326653 ~ 4379819 (+)
G742 NA non-coding downstream 978487 4483890 ~ 4484270 (+)
AMCG00003473 NA other downstream 947161 4452564 ~ 4455142 (+)
AMCG00003469 NA other downstream 1008628 4514031 ~ 4522400 (+)
AMCG00003480 NA other downstream 1798047 5303450 ~ 5334752 (+)
G1012 NA other downstream 2982289 6487692 ~ 6494905 (+)
AMCG00003524 rps7,LOC107668222 other downstream 3992637 7498040 ~ 7504015 (+)

Expression


Co-expression Network