AMCG00003480


Basic Information

Item Value
gene id AMCG00003480
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5303450 ~ 5334752 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003480
ATGGGAGCCGTCACACAGCGCTCTGACTCAGGCCTGCGAGGGGCAGCGCTCAGTGCGGATCGACCAGAGGAACTGATGAGCTGGCGTTTCAATCTGCCCCACCAGCCTGAGCGACGCAGTGGATGGACAGCCGGACCGAGGGTTAGCGAGCCGCTCGAGGATCCAGGGAAGATGAGGAGTCTGATCAGACGGCCCCAGCTCTGCGCACTCGACGAGGTGAAGTGTTTGACATACCAAGACAACGGCCCTTCCCCTCCAGTGCCAACCTTAGGGACTGAGATTGAGGAGAATGCCCTTCCAATTTATTACCAGACGAGGGCATGGAATGAGAGACGCTGTGTCCCAGACAAGACTGGGCATCAGGCCCCAGCCAGTGAAACAGTGAGGACCCCCCCAGGACTCGCCCAGGGCCTGTGATGACCCTGCTTCACACAAAGTGGGGGACAAATTCTAGCCGATGAgaacctgttttgttttgtttaggttttttctTCAAATCTGTAACTTTTAGGCATTCAAGGGAATTTTAAAGGCAggcatctttttttcttcagttgttttATGTCATTGCATCACCGATACCTGCTGAAGATGTGAAAGTTCTGAAAAAGCAGGTGAAATCCAGCACTTCAGTTGAAAGGAAGAAGCACTTTTCAGTTCCACGCCATCACAGGGTTCAGAGTGACACTCAGGGATACTCAGGGCTAAAGCAACctttgtactttatttattaaaacaaaaagaaactaaTTCACTTTTATAGACAATTTACTATGGGGGACCAGCCTGTCTACAAGACCAACCACATTGTGAATTGCACTGACAGCAGGTATTTCCAGCAGCAGCAAAACTCCTTGTCTGCAATGAACCACAGCTACAGCACGCCTGGCATGGAGTCACTGCAGTCCCCGGTCTCACCCCATTTTGACTCCCAGGACGGCTCCGCGGTGAAGCCTTTTCCAGGGATGGTGGAGGTTTCCAAAGCTGCCGGTTCATGGCCAGGGCCTGTCAGCAACCACAGGAACAGCATGGGCAACGCCGGCGTAATGTGGAGCTCCCCCACGCAGGGAGAGGCTCCGGACGTGGCCGACAGCAGCAACAGTGGCGGGGGCTACCAGTACAGCATGACAGGGCAGAGCAACGCCAACGGGCAGCCCAAAATCACCAGCAGCGTCTTACAGAAGCTGGACTCCTTTACCCAGGTCTTTTCCAACCAGAACCTGCGCATCCACCAGGGCAATGGCATCGCCAACAGCCTGGCTCAGCACCTGCAAGTGGGCCTCCCCCCTTCTCTGCCCGTCACCGCCACAGACAGTGCCCTCTGCCAACTCCTTTCCCATAAACCCCCAGGGCACGAAGCACAGCAGGTGGCcatacagcagcagcaacaacaacccCAGCAGAGGTACCAACTGGAGCAGCAGATGCAGATGCAGCCCAAACAGCAGCATGTCCAAGAGCTGCATCAACACCaccagcaacagcagcagcagctgtatTATGagttccagcagcagcagcagcagcagcagcagcagcagctccagcagcaaCAGAGAGCGGCCCAACTGCAGCACCTGCACCAGGCCctgcagcaccagcagcagatGCAAAGCCTACAGTCCCAGCAGCAGCtcatacagcagcagcagcaaagtCAGTACTACTTACAGCAGCAGCCTCCAGCACAAGCACAGCTCCCTGCCCAGGCGCTGGTCCTGCAGCAGctacagcaacagcagcagcagcagcagcaacagcagcagcgcAGTGTGTACTACCCCCAGCAAGCCCACGCCGCCATGCATCAGGGGCAGCAGCCCATGCAGCCTCCAGCCAGCCTGCCTCACTACAGTCAGAACCGGAAAGccgtgcagcagcagcagcagcagcagccgccacCAGCACAGCCCCCATACTCGCCCGTGGAGCCGGCCCACCCCTCCATGCAGCACCTCCAGCTCCCCGCGGGGCAGCAGTATTACTACCAGGAGCCGCAGGAGCCATACAGACAGTTGTACCAGCACAGTGTGCACTTGCAGCAGCCGGCCCAGGTCCAGGCCCGGGATGAGCTGGGCCTCCAGTCGCCGGGCAAGCAGTACCTCCCTGAGCCCGGCTGTCACCTGCTCGATCCCCACACCCAGGACCTGGGGGAGCTGGTGTCTGGAGTCCAGGGTGTCCCCAAGAAGAGAGAAGATGGCCTGGCCTGTCCAGAACCTTCTCCTACACTGCCCATGGCATGCGGCCCGCTCCagcagggtcagaggtcagtcCGAGAGGCCATGCCAACCATCCAGCTGGTGAGCAGCAAAGGAGGGGTCCAGCGGCAGCACCTCTCTCCCAGCCCCCATTGGACACAGGTGTCTTTACCAAACGTCAAGGCAGACCGTTCTTCTCCAGATCACATCAGCGCTCTGCTAGAGAGAGAAGACATGAAGAACAGACTGTTGTGCTCCATGTGTCAGAAGGAATTCAAAAGTCTGCCGGCGCTCAACGGACACATGCGCTCTCATGGGGGTATGAGGGCTCTGCCAGTACCCAAACAGGAAGAAGGGGACACACAGCTGCCCAAAGAGGTGGAGCCCCTGCTTCCCATCGTCATGCCTGTGTCTGTGCCTGTAAAGCTCTCTCCTGCTCGCTGCCGCGCCCCTGGCTCCGAGGCGGCCCCCCGTGCCCTGCAGACCGGCGACCCTTCCAAGCCCATGCAGCAGCAGCGGCGgccgcagcagcagcatttGCCCCTCGGCTCTGGAGCGGCCCACCCTAGTGCCGTCCCCTCTGACTCCGTCCGCCAGGCCCAGAAGTCGGAGAAGCCGGTGCGGGGGGGGCAGCAGGACAAGAAGAAGTACCGCCACCGACCGGAACCGCTCATCATCCCGTCGCCCTGCCCGGGCCTGACCGGTGGGGGTGCCACTCTGTTCCAGAGCCAGCTGCGCTCCCCGCGGGTCCTGGGGGAGCCCCCACCCTACACCCCGCCCCCCATGCTGAGTCCGGTGCGCCTGGGCTCGGGCCTCTTCAGCAGCGTGAGCAGCAGCCTCTTCCATGCCGGCATGCCCCTCACGCCTGCGACTCCGCGCATGCTGCTCTGCAGGACCAGCAGTGTGGACGGCGGCGCAGTGGCGGTGACACCAGGGCCAGGAGAGCAGGCCATGGATGTGGAGCCACGTATCAACATCGGCGCGCGGTTCCAGGCGGTGGTTCCGGAGCTGCGGAGATATTCCCGGGTGGAGAAAGACGTTCACAAGGCCAGCATGGTCTGGACCCCCTGGGCAGAGCTGGACACCCCCGAGACTCAGCAGAAAGTGAACCACCTGGTGAACATGGCCTGCTCCAGCGTCCTGCCGGGCGGGGGTACCAACGCCGAGTTCGCTCTGCACTGTCTGTTCGAGTGCAAAGGCAACTTCATGgctacACTGGAGAAGCTGCTAATTCTGAAGCCCTCAAGACCAAAATCCCATCCTCTTGCTGATTACCACTATGCTGGATCTGATAAGTGGACAGTCCTGGAGAAGAAGCAGCTAAATAAAGCCCTGGCTGTATACAACAAGGACTTCTTTCTCGTCCAGAAAATGGTGAAGACTAAAACAGTGGCACAGTGCGTTGAGTACTATTACACCTGGAAGAAGAGGCTGCGTCTTGGCAAGCAACCCCGGCCTCGCCTTGCTAACCAGGAGAGTGAAGACATGGCCAGTGGAGAGGAGGTGGGGCTGGAATCGGACGAGCTGGAGGAGGACAGAAAGTCCATCAAGGAAGAGGAGCCTCCAGGCCCCAGGTCTCCCGATCAGGAGCTCCCGCTGTGCGTCGAGGCAGCAGACCACATCTCGGCTCTATCCAATGCCTCTTTTGTGTGTGAGGTCCCCAACTGTGGGTCTATTTTCAACTCCAAGCAGGCTCTGAATGGTCACGCTCGCATCCACAGCAACACCAGCCAGGCCCAGCGGCCCATTCCCGGCAGCAAACCCAAAGCAGCATCACAGTCGGGCCACGGCTCGGTCAAGAACTCCCCCGCTCACAGCACCACCAGCGGAGACACGGACCCCACCGTCATCTTCCCCTGTAAAGAGTGCGGAAAGGTGTTCTTCAAAATCAAGAGCCGCAACGCCCACATGAAGACGCACCGGCAGCAGGAAGACCCCGAGCGCAGGAGGACGCAGCGGGCGCCGGAGAGCGTGGAGCTGCACGCGGCCTACCGCGCCCCTCCACCCGTGCCCATCGCGCCCCTGCCGCTACCCTTTGACCACATGGGTATGGTGAAGCGGGTAAagactgaggaggaggaggaggaggaagaggacacCCTGATGAACGCGCACTTGCTGCTGGTGCGGGAGCCGGGCGAGTACCTGGCGGGGGAGGAGCTGTGATGGAACTGGCCTCCCCAGGGGAGAGGGGTTGAGCTGCGCCCCCGCACCAAAGACCATCTATGAAATGAATACACTTTTGATCAAGCCCTGGAGAGATGGCTGGACAGGggccttttcttcttctctatCCCTGTTGAGATGCCCAGGTGTATTTCTCCAAGtttctctttattgtttttttaaagcttttgacCATGTTTTTCTGAATGCAGGGGATGAAGGGATGATAACACTTATTATTCTTCAGCGGTTGACAACATCCCTCAGATACTCTAGTCTATCCAACACTGTAACAAAGACTTGGAAAATGTCCGGGCTGCCAAAGGTTACTGCAGTAGAAAACTGATCTCAGTGTCCTGCATAGAGGAGCTGCAGATCTACAGATGCGTCTTTTCTcaggtgtgtgtttttaaacccCCTTAGTAATGTGAGATGTGAGAGAAATGTTCTGCTGGCTGGGGGGCTCTTATTCCAGGCCATGGCCTTCAATTCTAAACTTTCATTCAATCTGGAAAAATGGCAAATCAAAATAGAGCGATTATTGTCGTATTGATACTGAAATCAGTACAGCAGGGTAATTGCAGCCATGTTGATGTCAAGGAACGTCCTCTCCAAGAGGACAGCTTGACATTTCAGTGGGTTGACACCCTGTTGCGAGTGGGTGCAGAGGTTTCCAGATGTTTTCTCAGTGCGCAGGGCCTGTCTTATCTCAGGTATCACACTCAGGTGTAGCTTTAGAAACAAACATGATCACAACTCTTCTTAGTCTATAAAAACCCAAAGGCTCTTGATGGTTTTCTTGATGGTTGCATCACAgtataagaaaaacacagacaagcTCGGTTAGGCTCAAAGAACTCAAAGGATTCggaccatttatttttttctggacacTTAAGATGACTGTTAATTCTTGTTAATTGACCATTTTCCTTACATTTATCTGCGGTCAGCTATAAACTTCTGATGATAAATGGATGAAAACAGTGGAAATCAGAACCACCGATGTTCTTAACCAACAGGCTTCTCTGACAGGCAGGTGAATGTGGGGCCATTTCCATATCACAATGGTCCCAAAAGGCAGGTACTGCTCATCTTGAACCAAACATCGCTGGGGGTCTGACACAGACGTGCTGTCCTCAGAGGCGGGCTTGAGAAACTGCTGGTCAGTTTCCAGAatagtaaatacatacaattacattcaaattgcCTTTGGAATTAGAAGGCTGTATTTAGCAATGTCAGTGCCAGGGTATACCGCAAGCCAGCGAGCCACAAAATAGTAATTAAGggacaaaacacatatttaaaagtacatatataataaaaagcattatcctctttaaaataaatataaagaaacaggaTTATTCTGAATGAATTGTATACCAAAACCAGAATCTGTAACatattttgaagttttattcataggattttgaaaagattttaatgatttatcaGTTCTTGTTCAAGATACCGTGCAAAAGGAAGAAAGGTTTGAAATGTTAGGTCTTTACATGTTTATGGCTatagtttgtatgtatatatatccttGACATGTTTTCATATTTCGTCACATTTGCTAAGTATTGCATTCTGGGCAAACTGGTGGAAGATTTCAGGACAGCACTTTCAGTCTTTCGGGGACAGTGCAGGAGTGTCACAGCATATCGTGGCTCTCAGGACAGAACCGTTTGCATCTTCATAATTcgttaaaaatgaaatgtgcaaatGGACACAAAAGGTCTCCGGCGGGCAGCCATGAATACACAGAAGATGCCAAGCACAGTCACACTGGGATAACAGTTTACTCATCCTGTGCTCTAAAGTCCACTGCTATTTGTTCTATGTaagttcattattttaaaataaatcaagccACGAGGCAAGTATTTTGCTGCCTTACATCAACTGTAAACTAGTAAAAAGGGAAGTCTAATCCACTATTAACCCTTGACTTACCAGGAGTACATATACTTTGCCTACTGTATGGAAGACAGTTAATAGTAGTTATAATTGAAAATGACACTGAGGATGTATTGATATAGAGCGATTTGAAATGAGGTACCTAACAGCACATATGctgaattgtgtttatatttgcacttaatgtttacattaacccccccccccgtgGAGAAATGACTTTGTGTAGCTAAAGACAGGTTCCACAAATATGTATCGATAACGCCCCCTTCTGTCCTTCCTTCCATCCTTCCATACTAACGGAAATAGGAGAACTGATATTGAGGTGTGCTCGATTCTCAAAACTCCCATCCAAAACAGTGCACAGTAATAGTAGATACTAGTCAATATACAGTGGTGTTAATGTGGCATAACTGGGATATGTGAGTTCTCTGTATTAATTACCAACACTTTCATTTAGTTCAACATTGTCAAATTTCATGTCAGTTGTTCATTTCCCATCGTAAAAGGGAGTATTATTTTGTGAAGAGGCTTAAAGTGAGCCCAATGGACTTCAGATACTGTTGTATTTCATTCTTCttaaatatttctttaaatatatctaattaAGGTTTGGGAGGGCTCGTCTAGCAGCCCCAGGTGACTTTGCTTGATTGTATGATTGGTGGTTCAACAGTTCAGTTGCTGTGGGGATCTGATGTACTTTTATTTAGCAGAAGGTACTACAGCATTACATCATTACATTTAGGACTTGCCTTTACTGAAATATAACTAATAGTGATGTTCGGGTTTTTTCAATTGCCTTGGACCGAAATACATAAGTATttgctgttaaaaaatatgGTGCATGACAAGAGATCAGGTTTGGTCAGGTCTAAAGTGCCATATATTGTCTCAATGCACGTCAAAGTGAAGTTTACAAGTTTTCATTTGATTGTAGTCGAGGCAGCAGATCGATACCAGTCCCAAACAAGATAAAACCAGTTCCTCACAGTATATGACACGGGGAATGAGTTGGCAATTCCAGTACTGTTGGGCCGAGGGGGTTTCTGGGATTGCATTCCACCGCAGGTCTTCATTAATTAAGGGAAGTCTTTATTAGGATAAAAAGTGAAATTGCTCgtttatttcttaaatcagtTGCTAAGTGGAAGGTGCTGTGAATCCTACAAACGCAGGTCCTCAAGGACTGGGATTGCCGAGCCCTGACACAAGTTTCATAGCTGTTCTTGAAGTAAACGCTTCAAATTACAACCACTAATGAATGTCAGTTAAgtttgtcatttaattaatgtcattaagTCTCTTTTGTAACTAACAGAAAATATTTAGcccctgcttttttttt
>TU992
GGTTTGAAATGTTAGGTCTTTACATGTTTATGGCTatagtttgtatgtatatatatccttGACATGTTTTCATATTTCGTCACATTTGCTAAGTATTGCATTCTGGGCAAACTGGTGGAAGATTTCAGGACAGCACTTTCAGTCTTTCGGGGACAGTGCAGGAGTGTCACAGCATATCGTGGCTCTCAGGACAGAACCGTTTGCATCTTCATAATTcgttaaaaatgaaatgtgcaaatGGACACAAAAGGTCTCCGGCGGGCAGCCATGAATACACAGAAGATGCCAAGCACAGTCACACTGGGATAACAGTTTACTCATCCTGTGCTCTAAAGTCCACTGCTATTTGTTCTATGTaagttcattattttaaaataaatcaagccACGAGGCAAGTATTTTGCTGCCTTACATCAACTGTAAACTAGTAAAAAGGGAAGTCTAATCCACTATTAACCCTTGACTTACCAGGAGTACATATACTTTGCCTACTGTATGGAAGACAGTTAATAGTAGTTATAATTGAAAATGACACTGAGGATGTATTGATATAGAGCGATTTGAAATGAGGTACCTAACAGCACATATGctgaattgtgtttatatttgcacttaatgtttacattaacccccccccccgtgGAGAAATGACTTTGTGTAGCTAAAGACAGGTTCCACAAATATGTATCGATAACGCCCCCTTCTGTCCTTCCTTCCATCCTTCCATACTAACGGAAATAGGAGAACTGATATTGAGGTGTGCTCGATTCTCAAAACTCCCATCCAAAACAGTGCACAGTAATAGTAGATACTAGTCAATATACAGTGGTGTTAATGTGGCATAACTGGGATATGTGAGTTCTCTGTATTAATTACCAACACTTTCATTTAGTTCAACATTGTCAAATTTCATGTCAGTTGTTCATTTCCCATCGTAAAAGGGAGTATTATTTTGTGAAGAGGCTTAAAGTGAGCCCAATGGACTTCAGATACTGTTGTATTTCATTCTTCttaaatatttctttaaatatatctaattaAGGTTTGGGAGGGCTCGTCTAGCAGCCCCAGGTGACTTTGCTTGATTGTATGATTGGTGGTTCAACAGTTCAGTTGCTGTGGGGATCTGATGTACTTTTATTTAGCAGAAGGTACTACAGCATTACATCATTACATTTAGGACTTGCCTTTACTGAAATATAACTAATAGTGATGTTCGGGTTTTTTCAATTGCCTTGGACCGAAATACATAAGTATttgctgttaaaaaatatgGTGCATGACAAGAGATCAGGTTTGGTCAGGTCTAAAGTGCCATATATTGTCTCAATGCACGTCAAAGTGAAGTTTACAAGTTTTCATTTGATTGTAGTCGAGGCAGCAGATCGATACCAGTCCCAAACAAGATAAAACCAGTTCCTCACAGTATATGACACGGGGAATGAGTTGGCAATTCCAGTACTGTTGGGCCGAGGGGGTTTCTGGGATTGCATTCCACCGCAGGTCTTCATTAATTAAGGGAAGTCTTTATTAGGATAAAAAGTGAAATTGCTCgtttatttcttaaatcagtTGCTAAGTGGAAGGTGCTGTGAATCCTACAAACGCAGGTCCTCAAGGACTGGGATTGCCGAGCCCTGACACAAGTTTCATAGCTGTTCTTGAAGTAAACGCTTCAAATTACAACCACTAATGAATGTCAGTTAAgtttgtcatttaattaatgtcattaagTCTCTTTTGTAACTAACAGAAAATATTTAGcccctgcttttttttttttttgagggactaatgaatgtttttttattttatttattactatagTTATTATTCTAAATGTTAAGTTGGaggctgatttttatttttattttcatttggaaaTGTATCTTTTTGTATGTTTCTCAAGGGAGTGACAAGAGATGTAaataggtttatatatatataaatatatttttaagcatatggataatgttttattttacagagataTTTATCTGTGATGTTGTTTTTACTGCGGGAAGGGTAGATATTTTGTACTGTTGAATCTGGACTTTTTATAATAAACCAGGATTAAAGCGTGGCCCAAGAATTATTAGTCTTTGTTACTTGATTGTGAAATTCTTTCCctatttgttgctgtttttttgtttttctatttctacAATTGTTTTGTAAGGTACGTGTAATGTACGCCTGACGAGTTTGCTTCCAgttcttatttattaaaacttgCACTGTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003480 True 7638 mRNA 0.51 18 5303450 5334288
TU992 False 2244 lncRNA 0.35 1 5332509 5334752

Neighbor

gene id symbol gene type direction distance location
AMCG00003478 LOC108428732,LOC107594120,LOC107734000,LOC107552030,LOC106571024,LOC103363535 coding upstream 116177 5175015 ~ 5187273 (+)
AMCG00003475 NA coding upstream 608113 4689484 ~ 4695337 (+)
AMCG00003468 NA coding upstream 759689 4541643 ~ 4543761 (+)
AMCG00003474 NA coding upstream 831719 4471337 ~ 4471731 (+)
AMCG00003467 eif2b4 coding upstream 867983 4427711 ~ 4435467 (+)
AMCG00003481 NA coding downstream 739 5335491 ~ 5339847 (+)
AMCG00003485 NA coding downstream 44276 5379028 ~ 5402540 (+)
AMCG00003487 NA coding downstream 129007 5463759 ~ 5506907 (+)
AMCG00003495 NA coding downstream 417391 5752143 ~ 5753261 (+)
AMCG00003498 NA coding downstream 432606 5767358 ~ 5769937 (+)
G752 NA non-coding upstream 749805 4552898 ~ 4553645 (+)
G742 NA non-coding upstream 819180 4483890 ~ 4484270 (+)
G690 NA non-coding upstream 923631 4326653 ~ 4379819 (+)
G684 NA non-coding upstream 928511 4296559 ~ 4374939 (+)
G646 NA non-coding upstream 1213131 4086896 ~ 4090319 (+)
G907 kbtbd11 non-coding downstream 215993 5550745 ~ 5556306 (+)
G908 NA non-coding downstream 222855 5557607 ~ 5558515 (+)
G960 NA non-coding downstream 494707 5829459 ~ 5829745 (+)
G983 NA non-coding downstream 620852 5955604 ~ 5955820 (+)
G990 NA non-coding downstream 651286 5986038 ~ 5986394 (+)
AMCG00003469 NA other upstream 781050 4514031 ~ 4522400 (+)
AMCG00003473 NA other upstream 848308 4452564 ~ 4455142 (+)
G1012 NA other downstream 1152940 6487692 ~ 6494905 (+)
AMCG00003524 rps7,LOC107668222 other downstream 2163288 7498040 ~ 7504015 (+)
AMCG00003534 id2,LOC106566577 other downstream 3314373 8649125 ~ 8652470 (+)
AMCG00003541 asap2,LOC106566627 other downstream 3565704 8900456 ~ 8941751 (+)
AMCG00003544 NA other downstream 3741138 9075890 ~ 9106765 (+)

Expression


Co-expression Network