AMCG00003478 (LOC108428732,LOC107594120,LOC107734000,LOC107552030,LOC106571024,LOC103363535)


Basic Information

Item Value
gene id AMCG00003478
gene name LOC108428732,LOC107594120,LOC107734000,LOC107552030,LOC106571024,LOC103363535
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5175015 ~ 5187273 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003478
ATGAAGTATCTTTTGAACACTCAGATGAATGTCCAGTCTGATCTGGTGGCGGACTTTGAACATGTGGACAAGGTGTTCTGTCACGAGAGGTCTCACTCCCACGCCGAAGAGGAGCTCTTCAAGAAGCTGTTCATCGGCTACAACAGATGGTCCAGGCCCGTTCCAAACATCTCCGACGTCGTCATTGTCAAGTTTGGCCTCTCCATTGCCCAGCTGATTGATGTGGATGAGAAGAACCAGATGATGACCACAAATGTTTGGCTGAAGCAGGAGTGGAATGACTACAAGCTGCAATGGAAACCGTCAGATTATGACAACGTCACGTCCATCCGTGTGCCCTCCGAGATGATCTGGGTGCCGGACATCGTGCTGTATAACAATGCTGATGGCGAGTTCGCAGTGACCCACATGACCAAAGCCCACCTGTTCTACACGGGCATGGTGCAGTGGGTGCCCCCTGCCATCTACAAGAGCTCCTGCAGCATCGACGTCACCTTCTTCCCCTTTGACCAGCAGAACTGCAAGATGAAGTTCGGCTCATGGACCTACGACAAGGCCAAGATCGACCTGGAACGCATCGAAAACACTGTGGACCTCAAGGACTATTGGGAGAGTGGGGAGTGGGCCATCATTAATGCAGTGGGCACCTACAACACTAAAAAGTATGACTGCTGCCATGAGATCTACCCCGACATTACATACTTCTTCATCATCCGTCGGCTGCCCCTCTTCTACACCATCAACCTCATCATCCCCTGCCTGCTCATCTCCTGCCTGACCGTGCTGGTCTTCTACCTGCCCTCAGACTGCGGCGAGAAGATCACCTTGTGCATCTCCGTGTTGCTGTCCCTCACTGTGTTCCTGCTGCTCATCACTGAGATCATCCCCTCCACCTCCCTGGTCATCCCCCTCATCGGCGAGTACCTACTCTTCACCATGATCTTCGTCACGCTGTCCATTGTCATCACCGTCTTCGTGCTCAACGTGCACCATCGCTCGCCCAGCACCCACAAGATGCCCCGCTGGGTGCGCAGCGTCTTCCTCGAGTTCATCCCCCGCTGGCTGTTCATGAAGCGGCCCACCCCGGACGAGAAGCATCGCcgcctcctgcagcagcagcagcaggaccaGAGCGACACCAAGCTCAGCACCTCTAGGTACTGGCTGGAGACCGACGTGGACCTCAAGTACAGCGACGCCGAGCTGGGCAtcccctccttctcccccccTCCCGCCGGCGCCGCCTCGGCCCGCCTGCCCACGTCCACCCACAGCCCCCTCCCGCAGAAACACAGCCTGCACCACCGACTAGAAGGAATGGCTCGCCAGCTCGGGGGCCGGGTCAACCCCACCCAGCGCCCTGCCAAGATAGACAACCTGGTGTCCGACCCCAACTTCCCCTTCTCCCCCAGCATCCTGCGGGCCCTGGAGGGAGTGCACTATATCGCAGACCACCTCCGGGCAGAAGACGCAGACTTCTCTGTGAAGGAGGACTGGAAATACGTCGCTATGGTGATTGACCGCATTTTCCTGTGGATGTTCATCATCGTGTGCTTGTTGGGTACGATTGGGCTCTTCCTCCCACCCTGGCTCGCCGGGATGATCTAG

Function

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit alpha-2-like

GO: NA

KEGG:

id description
K04804 CHRNA2; nicotinic acetylcholine receptor alpha-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003478 True 1608 mRNA 0.57 6 5175015 5187273

Neighbor

gene id symbol gene type direction distance location
AMCG00003475 NA coding upstream 479678 4689484 ~ 4695337 (+)
AMCG00003468 NA coding upstream 631254 4541643 ~ 4543761 (+)
AMCG00003474 NA coding upstream 703284 4471337 ~ 4471731 (+)
AMCG00003467 eif2b4 coding upstream 739548 4427711 ~ 4435467 (+)
AMCG00003465 NA coding upstream 808783 4350519 ~ 4366232 (+)
AMCG00003481 NA coding downstream 148218 5335491 ~ 5339847 (+)
AMCG00003485 NA coding downstream 191755 5379028 ~ 5402540 (+)
AMCG00003487 NA coding downstream 276486 5463759 ~ 5506907 (+)
AMCG00003495 NA coding downstream 564870 5752143 ~ 5753261 (+)
AMCG00003498 NA coding downstream 580085 5767358 ~ 5769937 (+)
G752 NA non-coding upstream 621370 4552898 ~ 4553645 (+)
G742 NA non-coding upstream 690745 4483890 ~ 4484270 (+)
G690 NA non-coding upstream 795196 4326653 ~ 4379819 (+)
G684 NA non-coding upstream 800076 4296559 ~ 4374939 (+)
G646 NA non-coding upstream 1084696 4086896 ~ 4090319 (+)
G907 kbtbd11 non-coding downstream 363472 5550745 ~ 5556306 (+)
G908 NA non-coding downstream 370334 5557607 ~ 5558515 (+)
G960 NA non-coding downstream 642186 5829459 ~ 5829745 (+)
G983 NA non-coding downstream 768331 5955604 ~ 5955820 (+)
G990 NA non-coding downstream 798765 5986038 ~ 5986394 (+)
AMCG00003469 NA other upstream 652615 4514031 ~ 4522400 (+)
AMCG00003473 NA other upstream 719873 4452564 ~ 4455142 (+)
AMCG00003480 NA other downstream 116177 5303450 ~ 5334752 (+)
G1012 NA other downstream 1300419 6487692 ~ 6494905 (+)
AMCG00003524 rps7,LOC107668222 other downstream 2310767 7498040 ~ 7504015 (+)
AMCG00003534 id2,LOC106566577 other downstream 3461852 8649125 ~ 8652470 (+)
AMCG00003541 asap2,LOC106566627 other downstream 3713183 8900456 ~ 8941751 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_00986217_00993874 CHRNA2B, CHRNA2 coding CI01000325 null 986217 ~ 994193 (+)