AMCG00003442 (ccdc25)


Basic Information

Item Value
gene id AMCG00003442
gene name ccdc25
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 3415214 ~ 3428290 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003442
GTCCACCTTCCCAGCACAACGCCCGCTGTCGGCCGCCGATGGACGGAGCTGTCAAACTCAAAGGCACCGGCGAGCCGTCTGGGTTTGGCGACAAAACCGCATTCGCACCTCATCTCCTTTCTTCGGCAGTCTTCGGGATGTGTCGTTTGTTTCCGACGCAGCAGttttATCTGCACCCACGCGCCGCCATGGTTTTATACTTCACGAGCGCCGGGTGTAAAATGAACAATATCAATATTGTGTATACACCGTGGGCCAACTtaaagaaaacaggagatatGGACGTGAAGATCGTTGCAGTAGAAAAGAAGATCAACGAGATTGTGAACCGGCTAGAGAAGACAAAAGAAGAGCGGTTCCCTGACCTGGCTGCGGAGAAGGAGGCCAGAGACCGCGAGGAGAGGAATGAGAAGAAAGTGCAGATCCAGGAGGTcaagaagaaagagaaggaggaaatgaagaagaaaaaggagatGGAGGACCTCAGgAGTTATTCCTCTCTTATGAAATCAGACAACATGAAGACAAATGAGGATGGAAACGATTCTGATGACTTCATGTAAAACTAACAAAATTATATCCGAGGATATGGACAGACACAACCAGTTTGAAAATCTGTTCATGTGAAGAACAAcaaatggttttagtttataTGGGAAGACACATACGAAGTAAAAAGTGCCAATAACAATCTGAACACTGATGCCCATGAGATCTCTAATTACTTTGTGTGTGCAGCTCAGTCCAAGGTGTTGTGCTGTCCAATTCTTTACAGCTTTAGCTTTCCTGCTACGGGAACAATCTGATCTTTTAGACCCCCTTCATTCACTAAAAGGGAAGCAAATGCCCGCACCATTTCGTCCGGTAGAATCTCTGTAATTGCTTCAATTCAATTGCTTGATTTTCtgacaaattgaaatgtaaagattTCATTCTCTTCCCTGACTTTATGAAGTGTTGTAACTGCTACATTCATACACCTGCAGTGTGAagatagtgtttgttttttgttttctttttcaaataaatatttacaatattagtTCA

Function

symbol description
ccdc25 Predicted to enable DNA binding activity. Predicted to be involved in positive regulation of cell motility. Predicted to be located in endomembrane system. Predicted to be integral component of plasma membrane. Orthologous to human CCDC25 (coiled-coil domain containing 25).

NR:

description
coiled-coil domain-containing protein 25

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003442 True 1047 mRNA 0.43 6 3415214 3428290

Neighbor

gene id symbol gene type direction distance location
AMCG00003438 LOC107602173 coding upstream 18736 3356883 ~ 3396478 (+)
AMCG00003434 NA coding upstream 212132 3189095 ~ 3203082 (+)
AMCG00003433 NA coding upstream 230385 3178253 ~ 3184829 (+)
AMCG00003432 NA coding upstream 255400 3159058 ~ 3159814 (+)
AMCG00003428 ehd3,LOC108429356,LOC107727655 coding upstream 560666 2842040 ~ 2854548 (+)
AMCG00003441 NA coding downstream 71466 3499756 ~ 3505403 (+)
AMCG00003446 NA coding downstream 145491 3573781 ~ 3575615 (+)
AMCG00003445 mtmr9 coding downstream 162046 3590336 ~ 3608951 (+)
AMCG00003448 tdh,LOC106571022,LOC107723287,LOC103024478,LOC107561940,LOC106608345,LOC107589050 coding downstream 185294 3613584 ~ 3620349 (+)
AMCG00003450 pinx1,LOC107746133 coding downstream 214337 3642627 ~ 3657790 (+)
G515 NA non-coding upstream 48871 3339846 ~ 3366343 (+)
G454 NA non-coding upstream 357013 3006968 ~ 3058201 (+)
G445 NA non-coding upstream 455783 2957218 ~ 2959431 (+)
G443 NA non-coding upstream 505772 2907642 ~ 2909442 (+)
G431 NA non-coding upstream 603662 2811314 ~ 2811552 (+)
G642 NA non-coding downstream 547463 3975753 ~ 3976039 (+)
G646 NA non-coding downstream 658606 4086896 ~ 4090319 (+)
G684 NA non-coding downstream 868269 4296559 ~ 4374939 (+)
G690 NA non-coding downstream 898363 4326653 ~ 4379819 (+)
G742 NA non-coding downstream 1055600 4483890 ~ 4484270 (+)
AMCG00003473 NA other downstream 1024274 4452564 ~ 4455142 (+)
AMCG00003469 NA other downstream 1085741 4514031 ~ 4522400 (+)
AMCG00003480 NA other downstream 1875160 5303450 ~ 5334752 (+)
G1012 NA other downstream 3059402 6487692 ~ 6494905 (+)
AMCG00003524 rps7,LOC107668222 other downstream 4069750 7498040 ~ 7504015 (+)

Expression


Co-expression Network