AMCG00003448 (tdh,LOC106571022,LOC107723287,LOC103024478,LOC107561940,LOC106608345,LOC107589050)


Basic Information

Item Value
gene id AMCG00003448
gene name tdh,LOC106571022,LOC107723287,LOC103024478,LOC107561940,LOC106608345,LOC107589050
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 3613584 ~ 3620349 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003448
tttttttttttttttttttaacttcaaataTATTCACCGTGACACGTTTTTAATTGTTGCCAGCTTATTACACGTTTTGCATTCTTGCATTATGAACGTGCCTTATGTGGGATCTTGTAAATGGAAGTGAGTGGCTATGTTCACCCAAGGGTTTAGATTGCCAATCTCTTAAATTTGAGAAGTTTCTCAGTTTTACTCCCCTTTCCAGTTTATCAGGTTTcaataaattgaataatattaTACTGAGAACCATATGgattgtatttacttaatttgaCCTATTTACAAATAGCTTGGAAATAATGTAACATGCTTGCCATTAATTAGGCTTGTTTTTGGTAGTTGTAAAAATTTGTAAACCATTGAACTGGTGGACAGTTCTCTAGTATTGTGATAAGTAAACTGGATTCTACATGAAGTGTTTTACATTCATTGTTTTGGCCTTATCCGTTACACATCACTCTTAATAATCACTAGGCTAGACTGTGATTTGGTGAAAAGtgagttttatttaaatcaaaaatagTGAAACCAGTCTCTAATTTGCAGGAGCATAATTGTGGTGTGGAGGAGgtggtgatttattttttaaaatatcctGTGTTCTGTTTTGCAGTGTTTGAGCACCTGTGTTCCTCAGACTCAGAACTTTCTATACATCTCAGATTCTGTGCTGAGATGCaaaaactgcaacaaaacaaaatgtggaaaacctCACATGAAAGGCATTTGACTCTGTAAAGTGATTTATACAAGTTTTGATAGTGTTCACATGTCCTTGCTTGTCTGCTTGTTGCAGGTGACTGAAGATGCCAGTTTTAAGAGCTCTGAGCAAGGCTGCCAGGCAGGCGCTGCTGGCCCCAGGCTGTGGGTGTCCTCCGCTGGCAGTTGCGGTCCGTAGCATCAGCTTCTCTCCGCGCCAGGTCACCAACGACGCCAGTTTCCACTCGGTCTCCTTCTCTGAGACTGACCATCCCAAGGTCCTCATCACGGGACCTTTTATCTATTCTGACATCTTGGACTACAAGAACCTGCGTGAGATCGTGGTGAACAACCGCATCACCTGGCTGGTTCACTACAGCGCCCTTCTCAGTGCTGTCGGGGAGGCCAACGTGTCACTGGCCCGCGCTGTCAACATCACTGgactACACAATATCCTGGACATTGCCGCAGAACATGGCCTGCGATTGTTTGTCCCCAGCACCATTGGGGCTTTTGGGCCCACGTCCCCACGCAACCCCACCCCTGACCTGTGTGTCCAGCGCCCCCGCACCATCTATGGGGTCTCCAAAGTGCATGCTGAGCTCATGGGAGAGTATTACCATCACCGGTATGGCCTGGATTTCCGCTGTCTGAGGTACCCTGGCATCATCTCAGCAGATTCTCAGCCAGGTGGAGGAACGACGGACTACGCAGTGGCGATCTTTCACGATGCCATCAAGACAGGCAAGTTTGAATGCAACCTGAAGCCGGACACACGGCTGCCCATGATGTACATCGACGATTGCTTGCGCGCCACCCTGGATGTGATGGAGGCTCCGGCCGAGCAGCTGACCATGCGGACCTATAACATCAACGCCATGAGCTTTAGCCCCGAGGAGCTGGTCGCCGAGGTTCAGAAACCGCTTCCTGACCTCCAGGTCACCTACAACATCGACCCTGTCCGCCAGGCCATCGCTGACAGCTGGCCCATGAATTTTGATGACAACAACGCACGGAAAGACTGGGGCTGGAAACATGACTACGACCTTCCCGAGTTGGTGACGACCATGCTGAACTTCCTTGGCGCAGACTCCCGGATCGCTCGTGCCAACTGAAGTGGGAGCGGGGCATCGGTCTGATCGGAGACgctgtgtatatactgtaaagACTGGGCTTTAGGTCACGGAGACACTGGTCTGTCAATAGTCTTTCCTCTGTGTATTTGAAGGTCATAGTTAGCCTAGTAAAAGCAACGTAGCTGGACTGGTGGTGGCGGGAATCGGACGCAGCCCACTTCTCCTCCCTGTCCTAGGTTTGGCTTTGCAAGCTGAGGATCCAAGTGTTATTGTCTTTCTTTGCTACCTGAAACCACTTTGGTCCTGTACAAATGGTGATATGAAGAGATGTTTAAAGTTGTGAGAAGATCTTTCTGAAATGCAGTGATTCTGTGAAATCTCAATTGGTATTTGACTGTAATGCCAAAGATCAGCCTTGCTTCGGACttcatggatttaaaaataagtactAGTACGAGATCCTATTTCCAGAGGTCATCTTGAAACCTCTTTATTTGCAACCTCATTTCAGTATTCTGCtggtttatttataaatcttGACAGAAATTTGAATTCCTTCCACCTAGTGCCTACTTATGTGTATATACTgggatgttatttattttctcaatgtgTTTGGAATGGGGAACTCCTAATTTGAGAAGTTTCATCAATGGCATAGTGaactttttttatgtatatactgtaatttTGAAGACAtgttaaatgctgttttttctgCTCCTTCTTTCAGGTCTAGTGATCCATGCAGtactatttataaaacatgaactgtggtttatttagtttttgataCAGCTGTCCACAAGACTTTATTACAGGTTTTGTTTCTAATTGTATATTGTGGTGATGCTAATATGAAACCTATTGTCACTACTACACTTTAATATGGCTATTTCAGATGGTCTTCATCTTGCAATTCTAGGTGTGGTCCATAAAATACAGGGTCTGATCTCTGAGTGGCAGCAAATGCCAGGTCACTTGTCTGTGTGCCATGATGAGGTGTTTAAAATTGGACATTTATGGTTGCACTAGAAATGCTTGATCAAGAATAAGTGTACAAAATGTGTCTACTCAAATAGCCATGTGAGGGGAATTAGACTTGTACTGATCTACTGCTATATTCACCTGCCACCAAAACCCTTCAGCCTGCATTGAGTACCCAGAGACATAGTGGAAGAAAACCACTTGTCTTCTGACCCTAAACCTGGGTGTCCTGTCTGTAAAAGCTTGCATATCTGGTCCCTTCCTTCTAAACATGGAAGTTGGGGAAAGGCTCGGCACTTCAGAGGCAGAAGTGCAATTTTTGTTGTCATCCTTTCAACTCTCTGAACCTCTTTGGATAGAGTTGCTGCAATTTTTTTAAGGTGTTGATTTGCAAAATGTCTGCTTTTGTCAATAAAGCCTTTTTCAACTAACACTggtaatttatttctgtatatacTTGTCTACATGCTTGGATAACATCAGAAGATGAATCCTTTATCTTGCAAAGCTCGGGTGCTTTAGAGAGCCCTTGCACAAGAAGATGTGgcattttgatattttactAGTAAAAGTTCTTGGAGAGAAGTGTGAGGTTGTTTTGGCAGTTGGTCCTCCAGACAGAATTTAGA

Function

symbol description
tdh Predicted to enable L-threonine 3-dehydrogenase activity. Predicted to be involved in threonine catabolic process. Is expressed in several structures, including immature eye; mucus secreting cell; nervous system; neural rod; and pancreas. Orthologous to human TDH (L-threonine dehydrogenase (pseudogene)).

NR:

description
PREDICTED: L-threonine 3-dehydrogenase, mitochondrial-like

GO:

id name namespace
GO:0006694 steroid biosynthetic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0008743 L-threonine 3-dehydrogenase activity molecular_function
GO:0050662 obsolete coenzyme binding molecular_function
GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity molecular_function

KEGG:

id description
K15789 TDH; threonine 3-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003448 True 3394 mRNA 0.44 6 3613584 3620349

Neighbor

gene id symbol gene type direction distance location
AMCG00003445 mtmr9 coding upstream 4633 3590336 ~ 3608951 (+)
AMCG00003446 NA coding upstream 37969 3573781 ~ 3575615 (+)
AMCG00003441 NA coding upstream 108181 3499756 ~ 3505403 (+)
AMCG00003442 ccdc25 coding upstream 185294 3415214 ~ 3428290 (+)
AMCG00003438 LOC107602173 coding upstream 217106 3356883 ~ 3396478 (+)
AMCG00003450 pinx1,LOC107746133 coding downstream 22278 3642627 ~ 3657790 (+)
AMCG00003447 LOC107736623 coding downstream 77974 3698323 ~ 3704894 (+)
AMCG00003452 NA coding downstream 131354 3751703 ~ 3752823 (+)
AMCG00003456 NA coding downstream 144137 3764486 ~ 3774374 (+)
AMCG00003454 NA coding downstream 205832 3826181 ~ 3844081 (+)
G515 NA non-coding upstream 247241 3339846 ~ 3366343 (+)
G454 NA non-coding upstream 555383 3006968 ~ 3058201 (+)
G445 NA non-coding upstream 654153 2957218 ~ 2959431 (+)
G443 NA non-coding upstream 704142 2907642 ~ 2909442 (+)
G431 NA non-coding upstream 802032 2811314 ~ 2811552 (+)
G642 NA non-coding downstream 355404 3975753 ~ 3976039 (+)
G646 NA non-coding downstream 466547 4086896 ~ 4090319 (+)
G684 NA non-coding downstream 676210 4296559 ~ 4374939 (+)
G690 NA non-coding downstream 706304 4326653 ~ 4379819 (+)
G742 NA non-coding downstream 863541 4483890 ~ 4484270 (+)
AMCG00003473 NA other downstream 832215 4452564 ~ 4455142 (+)
AMCG00003469 NA other downstream 893682 4514031 ~ 4522400 (+)
AMCG00003480 NA other downstream 1683101 5303450 ~ 5334752 (+)
G1012 NA other downstream 2867343 6487692 ~ 6494905 (+)
AMCG00003524 rps7,LOC107668222 other downstream 3877691 7498040 ~ 7504015 (+)

Expression


Co-expression Network