AMCG00003457 (fndc4,LOC107589087)


Basic Information

Item Value
gene id AMCG00003457
gene name fndc4,LOC107589087
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 4065461 ~ 4069062 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003457
GACCCCACAGTGCAGGGCGTGGACAAATCACGACATCTTCAGACGGGGGAGCTGATCATTATAGTGGTGGTGCTCATCATGTGGGCAGCTGTGATTGCTCTGTTCTGCAGACAATATGACATCATTAAAGACAACGattccaacaacaacaaggaaAAGGCCAAGCCGTCCTCAGAGCACAGCACGCCCGAGAGACCTTCTGGGGGACTCCTGCGCAGCAAGGTGAGTGCGAGGCCAGGTCATTAG

Function

symbol description
fndc4 Involved in response to transforming growth factor beta. Predicted to be located in endoplasmic reticulum and extracellular space. Predicted to be active in extracellular region and plasma membrane.

NR:

description
PREDICTED: fibronectin type III domain-containing protein 4 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003457 True 246 mRNA 0.54 2 4065461 4069062

Neighbor

gene id symbol gene type direction distance location
AMCG00003458 LOC107561937,LOC107746353,LOC107723530,LOC107589087,LOC107701471 coding upstream 25459 4035185 ~ 4040002 (+)
AMCG00003453 NA coding upstream 57976 3957571 ~ 4007485 (+)
AMCG00003455 NA coding upstream 107949 3901725 ~ 3957512 (+)
AMCG00003454 NA coding upstream 221380 3826181 ~ 3844081 (+)
AMCG00003456 NA coding upstream 291087 3764486 ~ 3774374 (+)
AMCG00003463 NA coding downstream 211050 4280112 ~ 4289948 (+)
AMCG00003465 NA coding downstream 281457 4350519 ~ 4366232 (+)
AMCG00003467 eif2b4 coding downstream 358649 4427711 ~ 4435467 (+)
AMCG00003474 NA coding downstream 402275 4471337 ~ 4471731 (+)
AMCG00003468 NA coding downstream 472581 4541643 ~ 4543761 (+)
G642 NA non-coding upstream 89422 3975753 ~ 3976039 (+)
G515 NA non-coding upstream 699118 3339846 ~ 3366343 (+)
G454 NA non-coding upstream 1007260 3006968 ~ 3058201 (+)
G445 NA non-coding upstream 1106030 2957218 ~ 2959431 (+)
G443 NA non-coding upstream 1156019 2907642 ~ 2909442 (+)
G646 NA non-coding downstream 17834 4086896 ~ 4090319 (+)
G684 NA non-coding downstream 227497 4296559 ~ 4374939 (+)
G690 NA non-coding downstream 257591 4326653 ~ 4379819 (+)
G742 NA non-coding downstream 414828 4483890 ~ 4484270 (+)
G752 NA non-coding downstream 483836 4552898 ~ 4553645 (+)
AMCG00003473 NA other downstream 383502 4452564 ~ 4455142 (+)
AMCG00003469 NA other downstream 444969 4514031 ~ 4522400 (+)
AMCG00003480 NA other downstream 1234388 5303450 ~ 5334752 (+)
G1012 NA other downstream 2418630 6487692 ~ 6494905 (+)
AMCG00003524 rps7,LOC107668222 other downstream 3428978 7498040 ~ 7504015 (+)

Expression


Co-expression Network