AMCG00003619 (LOC108427508,LOC101167911,LOC103355980,LOC108270165)



Basic Information


Item Value
gene id AMCG00003619
gene name LOC108427508,LOC101167911,LOC103355980,LOC108270165
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11866722 ~ 11878169 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00003619
CCCCATCCTGAAAAGAAGTCCAGATATCACAAAATCTCCGCTGACAAAATCTGAACAACTGCTACGAATAGATGACCATGACTTTACAATGAGACCCGGTTTTGGAGgaCCTGCAATCCCTGTTGGAGTGGATGTCCAAGTTGAAAGCCTTGATACCATCTCTGAAGTTGATATGGACTTCACGATGACCTTGTACTTGAGGCACTACTGGAAGGACGAGCGGCTATCCTTCCCGAGCAGCAACAACCAGAGCATGACTTTTGATGGCAGGCTGGTCAAGAAGATCTGGGTACCAGACATGTTCTTTGTACATTCCAAAAGATCCTTCATCCATGACACCACCACAGACAACGTGATGCTGCGAGTGTACCCAGACGGCAAGGTGCTCTACAGCCTGAGGGTTACAGTCACTGCAATGTGCAGCATGGACCTGAGCCGCTTCCCTTTGGACACCCAGACCTGTTCCTTAGAGATTGAGAGCTGGAATGAGTCTCTCAAAACGGACGAGAGGATATCATTGTCCCAGTTCCTCATTCAGAAGTTCCACACAACCACGAAGCTGGCCTTTTACAGCAGCACGGTCCTTGGTAACACACTCCACTGTTTCCTGGCACAGCTTCCCTGCACCTGTGGCATCGCACACCCCCGGCAAATGATGCTGGACACCAGCTACAGCGACATGGATGTCAACACCACTGGGACCTACGGCATGCCGGAGAACGGGGATAAGCAGGAGAGGATTTTAGTGCAGCTGGCACTGGGAGATGAGCGGACCACAGGCAGAAGGAAAAACTCACGGGGCTACGTGAGCATGTGGATCGACACACACGCCATTGACAAGTACTCCCGTGTTATCTTCCCTGGTGCCTACATCCTCTTCAACATCATCTACTGGTCCATCTATTCC

Function


NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit rho-1-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00003619 True 907 mRNA 0.51 6 11866722 11878169

Neighbor


gene id symbol gene type direction distance location
AMCG00003616 rngtt,LOC107554925,LOC107660510 coding downstream 145982 11707557 ~ 11720740 (-)
AMCG00003617 NA coding downstream 255042 11609163 ~ 11611680 (-)
AMCG00003613 cnr1,LOC104936193 coding downstream 289445 11575865 ~ 11577277 (-)
AMCG00003611 NA coding downstream 298441 11560562 ~ 11568281 (-)
AMCG00003610 NA coding downstream 324077 11528304 ~ 11542645 (-)
AMCG00003627 ube2j1 coding upstream 62325 11940494 ~ 11957654 (-)
AMCG00003626 rragd,LOC107564985,LOC107693082,LOC107583676,LOC108435430,LOC107755772 coding upstream 80403 11958572 ~ 11976961 (-)
AMCG00003629 LOC104963585,LOC104944503 coding upstream 201299 12079468 ~ 12130611 (-)
AMCG00003631 NA coding upstream 278198 12156367 ~ 12176632 (-)
AMCG00003632 NA coding upstream 378300 12256469 ~ 12283492 (-)
G2044 NA non-coding downstream 3621 11732804 ~ 11863101 (-)
G1935 NA non-coding downstream 480668 11381872 ~ 11386054 (-)
G1856 NA non-coding downstream 815644 11050151 ~ 11051078 (-)
G1744 NA non-coding downstream 1450835 10414938 ~ 10415887 (-)
G1631 NA non-coding downstream 2014384 9852069 ~ 9852338 (-)
G2066 NA non-coding upstream 148750 12026919 ~ 12027158 (-)
G2071 NA non-coding upstream 173076 12051245 ~ 12051491 (-)
G2079 NA non-coding upstream 189880 12068049 ~ 12068258 (-)
G2140 NA non-coding upstream 509439 12387608 ~ 12387931 (-)
G2142 NA non-coding upstream 539759 12417928 ~ 12418336 (-)
AMCG00003618 NA other downstream 77447 11743989 ~ 11789275 (-)
AMCG00003595 myo6,LOC106571274 other downstream 749817 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 910369 10951084 ~ 10956353 (-)
AMCG00003587 naa20 other downstream 1233610 10625346 ~ 10633112 (-)
AMCG00003573 NA other downstream 1988278 9874670 ~ 9878444 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other upstream 43822 11921991 ~ 11939783 (-)
AMCG00003625 NA other upstream 197150 12075319 ~ 12078152 (-)
G2236 NA other upstream 1156784 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 1193627 13071796 ~ 13116660 (-)
AMCG00003667 NA other upstream 1786574 13664743 ~ 13732039 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_00640395_00656798 GABRR1 coding CI01000325 null 640154 ~ 659176 (-)