AMCG00003652 (parp1,xdh,LOC102777090,LOC107603072,LOC104966294)


Basic Information

Item Value
gene id AMCG00003652
gene name parp1,xdh,LOC102777090,LOC107603072,LOC104966294
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13071796 ~ 13116660 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003652
ATGTTGGATCGCGATGAGGATATGCTCATAACTGGGGGTCGGCATCCCTTCCTGGGACGCTATAAGATCATGGAAAGAGCTTTGTTCCACATGGAAAACTGCTACAATATCCCCCACATTGGTGGCACCGGCTACATGTGTAAGACCAACCTGCCCTGCAACACTGCCTTCCGTGGCTTCGGAGGCCCCCAGGGAATGATGGTAGCTGAGTGCTGGATGACTGACGTGGCTATGAAATGTTGCCTGCCTGCGGACCAGGTGCGCAAGCTGAACATATACAAAGAAGGAGATGTGACACCGTTCAACCAGAAACTGGAGCAGTTCACCATTGCTCAATGCTGGGAGGAGTGCCTGCTGACCTCACAATACCACCAACGCAGGAAAGACATTGAAGAGTTTAACAGGCAGAATCGCTGGACGAAAAGGGGCATCTCCATTATTCCCACCAAGTTCGGAATCAGCTTCACAGCCAAATTTTTGAACCAGGCTGGAGCTCTGGTTCATGTGTACACAGACGGCTCAGTATTGCTCACCCATGGAGGCACAGAGATGGGGCAGGGCCTGCACACAAAGATGATCCAGAACCTTTGTACCACCATAGTTATGGATGTTGGCATCAGTCTGAACCCAGCGATCGACATTGGGCAGGTGGAAGGTGCATTCATGCAAGGGGTGGGTCTGTTCACCTTGGAGGAGCTACGCTACTCTCCTGAGGGAGTCTTGTACACCAGGGGCCCTGGCATGTACAAGATCCCTGGCTTTGGAGACATCCCCACCAAGCTCCGAGTGTCCCTCCTCCGAGACGCACCCAACGCCAAGGCCATCTACTCCTCCAAGTCTCCCATGTTTGATGGCAAAGTCCCCCATTGGCATCACTTCTCCTGCTTCTGGCAGAGGGCAGCTGTCCAGTCTCCCGGAGACATTTCTGGGTTCTCTGACCTGCGATGGGAGGACCAGGAGAAGGTGAAGAAAGCCATTGAGACGGGAGGAGCCACATCCGGGGgcAAAAGTGACTCAAAAGGTGCTGCCAAAGGAGAAAAGACACTGAATGACTTTGCTGTGGAGTATGCAAAGTCTAACAGGAGTACCTGCAAGGGTTGTGACCAGAAAATAGAGAAGgaTCAAATCCGGGTGTCCAAGAAGACCGTGGACCCAGAGAAACCTCAGCTGGGCCTTATCGACCGCTGGTACCACACGGGCTGTTTTGTTAGCAAAAGGGAAGAGTTGGACTTCAAACCACTCTACAGTGCCTCCCAGCTTAAAGGATTTGCAGCTTTGAGGGCGGAAGATAAGGAAGAGCTGAAGAAAAGGCTGCCAGCTGTCAAGGCCGAAGGAAAGAGGAAGGGGGATGAAACCGATGGAGATGGAGCCTcaaagaagaagcagaagaaggagGACAAAGAGGAGAAACAGCGGGAGAAACAGATGAAGGAACAGAACCAGCTCATCTGGAGCATCAAAGACGAGCTGAAGAAGTACTGCTCCGCAAACGACATGAAGGAGCTCCTCATCGCAAACGGACAGGAAGTGCCCTCCGGTGAATCCAATATCCTAGACAGCCTCTCTGACTGTATGGCGTTCGGGGCCTTGAAGGCTTGTGAGGAATGTCAGGGCCAGCTGGTGTTCAAGAGCGACGCGTATTACTGTACTGGAAACCTCTCGGCTTGGACCAAGTGTGTTGTCAAAACACAGACTCCCAACAGGAAGGACTGGCTCACTCCAAAGGAGTTCCACGAGATCCCCTATTTGAAGAAGTTCAAGTTTAAGCGCCAGGACAGGCTGTTCCCGCGGGTGCAGGCGCTGCCACCTCAGAACGCCACCAGCAGCAGTGCGTCCAGCACCCAAGTCTTGCCACTGGAGTCTGCGTCTGTGCCCACTGatAAACCACTGACTGGCATGAAGATCCTGTGTGTTGGGAAGCTGTCCAAGAACAAAGAGGAGCTGAAGACCGTTGTGGAAGAGCTCGGGGGGAAGATCACCAGCACGGCCAGCAAAGCCACTCTGTGTATCAGCACAAAGAAGGAAGTGGAGAAGCTGAGTAAGAAGATGGAGGAAGCGAAGGAGGCAGGGGTGCGGGTGGTGTCGGAGGGCTTCCTGTCCGAGGTCAAGTCCTCTGGAAAGGCCTTCCAGGAGCTCCTTTCCCTCCATGGCCTCTCTCCCTGGGGAGCCGAGGTCAAGCTGGAGACCCCGGCTGCGGCCGCCAAATCCAGTGGAGCTCCTGCCAGCAAGAGCTCGGGCCGAGTGAAGGAGGAAGAAGGTGCCAGTAAATCCAAGAAGATGAAACTAACAGTTAAAGGAGGAGCTGCAGTGGATCCTGATTCAGGTCTGGAGGACTGTGCTCATGTTCTTGATCAAAATGGCAAAATCTTCAGTGCCACCCTGGGTCTGGTTGATATTGTCAGAGGAACAAACTCTTATTACAAACTCCAGTTGCTAGAAGATGATGTCAAAAAGCGGTACTGGGTGTTCAGATCCTGGGGCCGTGTAGGAACTACCATTGGTGGCAACAAGTTAGATAAGTTCTCGGACAAGAACTCGGCCATCGACAACTTCCTCAGTTTGTATGAGGAGAAAACAGGGAATTCCTGGCACTCTACAAACTTCACAAAATACCCAAACAAATTCTACCCTCTGGAGATCGACTACGGACAGgCAGTGTCTGACGATTCTTCGGACTCCCACATCCTGGACCTGTCAAATCGCTTCTACACGCTCATACCACACGACTTTGGGATGAAGAAGCCACCCCTCTTGAATAATCTGGAGTACATTCAGGCCAAAGTGCAGATGCTGGATAATCTCCTCGATATTGAGGTGGCGTACAGCCTTCTCCGGGGAGGAACCGAGGATGAGAAGAAAGATCCCTTTGACATCAACTATGAGAAACTCAAAACAGAAATCCAGGGAAAGCATAGTGTGAAAGgtcTTGGTAAAACTGCACCAGATCCCAGTTCTACTGTGACATTGAATGGCATTGAGGTCCCGATCGGAAAAGGTGTCCCTTCAAATGTTCAGGACACCAGCCTGCTCTACAATGAATACATTGTATATGATGTGGCGCAGGTCAGCCTCAACTACCTGTTGAAAGTCAAGTTTAACTACCAGAGTTCGCTGTGGTGA
>TU2732
CTATTTTTGTACTTCCTGATCTTTGATCACTTAACATTGAGGTTTCCATGCACTGCCAGCATAACTTGGTAGGTATTGCGATACTAAGCAAGATGAGAGAAGAAGCTGTCCGGACACCCTTGTCAGCATCAACTCCTCTcggcctctctctcctccctccaggCAGTGTCTGACGATTCTTCGGACTCCCACATCCTGGACCTGTCAAATCGCTTCTACACGCTCATACCACACGACTTTGGGATGAAGAAGCCACCCCTCTTGAATAATCTGGAGTACATTCAGGCCAAAGTGCAGATGCTGGATAATCTCCTCGATATTGAGGTGGCGTACAGCCTTCTCCGGGGAGGAACCGAGGATGAGAAGAAAGATCCCTTTGACATCAACTATGAGAAACTCAAAACAGAAATCCAGGTAATGAGCTCTTTACCAGGGAAAGCATAGTGTGAAAGgtcTTGGTAAAACTGCACCAGATCCCAGTTCTACTGTGACATTGAATGGCATTGAGGTCCCGATCGGAAAAGGTGTCCCTTCAAATGTTCAGGACACCAGCCTGCTCTACAATGAATACATTGTATATGATGTGGCGCAGGTCAGCCTCAACTACCTGTTGAAAGTCAAGTTTAACTACCAGAGTTCGCTGTGGTGATGCTGTCGTTCACAGGCAGAAGGCCCACCTGAGGTGTGAGGCTGCTTTGGCTTAAACCCCCGATCCCAGAATGCGGATGGTCGTTGCTTTGGAACCACAGATCTNNNNNNNNNNGTACTTTCTTTTCCCT
>TU2733
CTATTTTTGTACTTCCTGATCTTTGATCACTTAACATTGAGGTTTCCATGCACTGCCAGCATAACTTGGTAGGTATTGCGATACTAAGCAAGATGAGAGAAGAAGCTGTCCGGACACCCTTGTCAGCATCAACTCCTCTcggcctctctctcctccctccaggCAGTGTCTGACGATTCTTCGGACTCCCACATCCTGGACCTGTCAAATCGCTTCTACACGCTCATACCACACGACTTTGGGATGAAGAAGCCACCCCTCTTGAATAATCTGGAGTACATTCAGGCCAAAGTGCAGATGCTGGATAATCTCCTCGATATTGAGGTGGCGTACAGCCTTCTCCGGGGAGGAACCGAGGATGAGAAGAAAGATCCCTTTGACATCAACTATGAGAAACTCAAAACAGAAATCCAGgtcTTGGTAAAACTGCACCAGATCCCAGTTCTACTGTGACATTGAATGGCATTGAGGTCCCGATCGGAAAAGGTGTCCCTTCAAATGTTCAGGACACCAGCCTGCTCTACAATGAATACATTGTATATGATGTGGCGCAGGTCAGCCTCAACTACCTGTTGAAAGTCAAGTTTAACTACCAGAGTTCGCTGTGGTGATGCTGTCGTTCACAGGCAGAAGGCCCACCTGAGGTGTGAGGCTGCTTTGGCTTAAACCCCCGATCCCAGAATGCGGATGGTCGTTGCTTTGGAACCACAGATCTNNNNNNNNNNGTACTTTCTTTTCCCT
>TU2747
NNNGCCTGTTCTGAGGTTGAAATCGATTGCCTGACTGGGGATCACAAGAACCTTTGTACCACCATAGTTATGGATGTTGGCATCAGTCTGAACCCAGCGATCGACATTGGGCAGGTGGAAGGTGCATTCATGCAAGGGGTGGGTCTGTTCACCTTGGAGGAGCTACGCTACTCTCCTGAGGGAGTCTTGTACACCAGGGGCCCTGGCATGTACAAGATCCCTGGCTTTGGAGACATCCCCACCAAGCTCCGAGTGTCCCTCCTCCGAGACGCACCCAACGCCAAGGCCATCTACTCCTCCAAGGTGAGCCCTGCCTTCCTGCTGTAGGT

Function

symbol description
parp1 Predicted to enable NAD+ ADP-ribosyltransferase activity and protein ADP-ribosylase activity. Predicted to be involved in double-strand break repair and protein poly-ADP-ribosylation. Predicted to act upstream of or within protein ADP-ribosylation. Predicted to be located in chromosome and nucleus. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in several diseases, including arthritis; bacterial meningitis; neurodegenerative disease (multiple); stomach carcinoma; and type 2 diabetes mellitus. Orthologous to human PARP1 (poly(ADP-ribose) polymerase 1).
xdh Predicted to enable xanthine dehydrogenase activity. Predicted to be involved in xanthine catabolic process. Predicted to be located in peroxisome. Predicted to be active in extracellular space. Is expressed in neural crest cell and xanthoblast. Human ortholog(s) of this gene implicated in several diseases, including Lesch-Nyhan syndrome; cardiovascular system disease (multiple); chronic kidney disease; hyperuricemia; and xanthinuria. Orthologous to human XDH (xanthine dehydrogenase).

NR:

description
PREDICTED: poly [ADP-ribose] polymerase 1-like

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K24070 PARP1; poly [ADP-ribose] polymerase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003652 True 3120 mRNA 0.52 24 13080192 13116660
TU2732 False 779 lncRNA 0.59 5 13071796 13081944
TU2733 False 741 lncRNA 0.41 5 13071796 13081944
TU2747 False 329 TUCP 0.55 3 13104356 13111128

Neighbor

gene id symbol gene type direction distance location
AMCG00003651 lin9,LOC107678835,LOC107726751,LOC107697095 coding downstream 6242 13055994 ~ 13065554 (-)
AMCG00003650 acbd3,LOC106571761 coding downstream 21404 13037692 ~ 13050392 (-)
AMCG00003645 NA coding downstream 103640 12926695 ~ 12968156 (-)
AMCG00003646 NA coding downstream 164907 12905372 ~ 12906889 (-)
AMCG00003644 NA coding downstream 180661 12883467 ~ 12891135 (-)
AMCG00003662 xdh,LOC104966294 coding upstream 706 13117366 ~ 13212180 (-)
AMCG00003660 NA coding upstream 100881 13217541 ~ 13233616 (-)
AMCG00003661 NA coding upstream 117413 13234073 ~ 13236047 (-)
AMCG00003658 wdr26,LOC103044372 coding upstream 134438 13251098 ~ 13270245 (-)
AMCG00003657 NA coding upstream 164791 13281451 ~ 13283514 (-)
G2235 NA non-coding downstream 37736 13033239 ~ 13034060 (-)
G2234 NA non-coding downstream 39032 13031928 ~ 13032764 (-)
G2196 NA non-coding downstream 169851 12898431 ~ 12901945 (-)
G2168 NA non-coding downstream 201845 12869501 ~ 12869951 (-)
G2142 NA non-coding downstream 653460 12417928 ~ 12418336 (-)
G2285 NA non-coding upstream 14960 13131620 ~ 13143528 (-)
G2287 NA non-coding upstream 55972 13172632 ~ 13178172 (-)
G2291 xdh,LOC107752765,LOC107592779,LOC107733164,LOC107674096 non-coding upstream 116835 13233495 ~ 13236993 (-)
G2324 NA non-coding upstream 298201 13414861 ~ 13415156 (-)
G2337 NA non-coding upstream 391232 13507892 ~ 13508930 (-)
G2236 NA other downstream 36307 13034953 ~ 13035489 (-)
AMCG00003625 NA other downstream 993644 12075319 ~ 12078152 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other downstream 1132013 11921991 ~ 11939783 (-)
AMCG00003618 NA other downstream 1282521 11743989 ~ 11789275 (-)
AMCG00003595 myo6,LOC106571274 other downstream 1954891 11063121 ~ 11116905 (-)
AMCG00003667 NA other upstream 548083 13664743 ~ 13732039 (-)
G2373 esrrg other upstream 892798 14009458 ~ 14013021 (-)
G2500 NA other upstream 1694126 14810786 ~ 14811331 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other upstream 2399013 15515673 ~ 15591730 (-)
AMCG00003734 NA other upstream 3490750 16607410 ~ 16628401 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017595 parp1 coding NC_007131.7 CM002904.2 43648369 ~ 43689779 (+)