AMCG00003651 (lin9,LOC107678835,LOC107726751,LOC107697095)


Basic Information

Item Value
gene id AMCG00003651
gene name lin9,LOC107678835,LOC107726751,LOC107697095
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13055994 ~ 13065554 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003651
TCTTCAGCAAAAGCTCTTGTGAGTCTGAAGGAGGGAAGTTTATCTAGCACCTGGAATGAGAAACACGGTTCTTTGCCAAAGTCTCAGAGCACCAAGGGAAGGAATACCTTTTCATCTATGGAAACGCCAACTAGGAGCTCAAAGAGGAGCCGCTTGTTCTGTGAGGAAGAGGACCGGCAGATGATCTCCAGGTCTCCTAGAAGAAGTCAGAGAGTTATAACAGTGCCTCAGaaacTTGCAACTGTTGCAACACCTGATAAAAAAGCATCACAAAAGATCGGGTTGAGATTGCGAAACCTCCTCAAGCTCCCCAAAGCACACAAGTGGTGCATCTATGAGTGGTTTTATTCCAATATCGACAGGCCGTTGTTTGAGGGGGACAAcgatttttgtgtttgcttgaAAGAATCGTTTCCGAACCTAAAAACCAGGAAGTTAACCCGAGTAGAATGGGCAACAATAAGAAGATTAATGGGAAAACCAAGACGGTGTTCTGCAGCATTCTTTGCAGAGGAGCGATCAGCACTGAAgcagaaaagacagaaaatcaGATTACTGCAGCAAAGAAAAGTCACAGACGTGTCGCACTGCAAAGATCTACCAGAGGAAATCCCACTGCCTTTAGTAATAGGAACCAAAGTCACAGCTCGACTGAGGGGTGTGCATGATGGCCTGTTTACGGGGCAGATAGACGCAGTTGACACCAGTGCCGCCACCTACAGAGTCACGTTTGACAGAAATGGGTTGGGAACGCACACCGTCCCCGACTATGAAGTGCTTAGCAATGAGCCTCACGAGACGATGCCCATCTCCGCCTTCGCTCAGAAACAGCGGCCATCCCGATTCCAGGCCTTCATGACGCCCCCCCGCCTGCCTTACGCCCCCTCCGCACAGCCTACGATCATGGATAACGATCCTTTACTGGGGCAGTCGCCGTGGAAAAGTAAGCTGTCGGGCACAGAAGGAGACACCCTGGGTGGCTTTCCAGTTAAATTTCTTGTGCAAGTTACGAGATTATCAAAAATCTTAATGATAAAGAAAGAACACATTAAGCAGCTGAAGGAAATGAACACTGAAGCAGAGAAATTGAAATCCTATTCGATGCCGATTGGGTTTGACTTTCAGAAGAGGTACGCCACCATTGTGTTGGACTTGGAGCAGCTCAACAAAGATCTGAACAAAGTCTTGCATGAAGTGCAGCAGTATTGCTATGAGCTGGCTCCCGAGCAGGGCATGCAGCCTGCAGACCAGCCCACAGATTTGCGGCGACGGTGCGAAGAAGAAGCACAAGAGATAGTGAGACAAGCCAACACGCTACCCAGCGGACAGCACTGTtgttTGGCAGAAGGGAGTGACTTGAATTCTTTCGAATTTAAGTCTCTGACTGATTCTCTAAATGACATCAAAAACTCAATAGATAGTTCGAATATCAGTTGCTTCCAGAATAACGTGGAGATCCACGTTGCGCACATTCAGACCGGTCTGAGCCAGATGGGGAATCTTCACGCGTTTGCAGCCAACAACACCAACAGAGTCTGAGCTTTAAATCCATCTATATTGTATATTAGGACACAATGGCTCTGTTCTCTGTATATGTTTTCATCTGTATCAGTGTGTAAATATACATCCACAGACTTCAGAGAAAGGTGACTTAAGAGTCTCCACATGCGCACACCCAGTAAGCACTCATAGTGGTAGTCTAGACCCAGACGACTGTCCATAGCACGGGCGTCTGTCCGCTGTTCACGTATGGCTTCATCCATTGCTGCAAGGCATTTCCTGCCTCCATTATTCCCTTTCATGGTCAAAAGTTTTTCCAaaagtgtttaataaatatggctgagttttaatttcacattactTCACCAATGTGTATATGGttctaaactaaactaaattgaATCTGCCAAGATTGTCTTCATCtgaaaataatagtaatgatcaAATATTGGATGATTTTGTCCACTGTTAATGCCAAAGTAAAGGAAGACATTCATGGACAGTAAAACGTTTGCAATTGCATTGTTAGGAATATCAGTCCTCAATTCTTAGTAGACACTTtggtgaaactgaaaatgtatctgcTCTGTCCTTACCTACAAACACTGTGCCAACTAAAGCAAATAATATAGtctgtatatattgtacagaGAGGCTCTGTAGTCGAtgtgtgaatattttttaaCCTCTCCTGGTATTGGCAATCAGGGTGATTTCTAGGCTCTAAGGACATCTCGCCTGTAATATGTTGCACATGAATCAGTGGAGAACAGCATAAACTAGGCTGAAGCTTAAAGCATTTTAAGGTTCCATAAACAATCAAATGACATTACTTCTGAGTCCtctacacatatatacagtgtatataaatgtatatactgtaaatattgcCCCTCATCTATTAATATTCACAAATGCTATCTCAGAAGGAGTGGATCGCTCTTCGTAACTCAActaaatttaaacacattttcctcCTTGGTCATTCAGACATCTTCTAAGTAAGTCTTTAATAAGTCTGATCTGCCAGAGGTCCAGTGTTTCCATTTCAGTCCAATTGAGAACTGACCAGTAAAACAGGTGATTTTATTTCAGATATCAAATCACTTGGCAGAAATCTCATGGTGCCTTTTCAGTTAACTGCCCTTTAAATATAGGCTACTGAGGGAAACTGAGTTCTGGGCCCTGTCTGCTTCACAAAAAAGTTTCTGGAATTCTCTTATTATTCTTAGAACTTTTTAAGTAACTTAAATTTTAACTGATGTCTTTGTGCCAAACAAGACTtcattgttagttttttcttgtcttttaatGTCACACCTTTTGTTCTGGCGCAGTCCTCGATCAGAGTTTGTAAAGTTCATACTTGTTCAATTTAAAGAGAGCATTGCAAATATATACTGGAATGTGTAACAAAGTTTAGAACAgttcaatatttttgttattctctGCAGGAGTAGGACATGGCTTGCTTGtataatatatgtttgtgtaaaGATTTTAACTTTCAACTGTTGCTACATCCTCTCGGAAGTAGAGGCCCTATgcagaaaattgtatttactggGAGACtgcatatttgtaatttattaaatgttatatttctgtGGAAGCAAACCTTAAAAAAGGCCTTTctgatgtaaaatgttaaaccaGGACAGAGtccattgattgttttgtgtAGATTAATGTAAAGTTTAACATGcaattgctttttaaagctTGTAGGTTTTCTTGTAGAAGTTTCAGTATGCCTCTTATATAGAGGTAacttttatacttttatgtAAGTATATTGAAAGAAATATTTTTATCTTCCAATTTTGTACACggttatatttttttcatatattttaaagcgGATCTGTGAGGTGTTGACTGACCCTCATTGTTTTGCTTGAGATATACGCTGTCCTTGACCATAAACAACTTCTCTGCTTTAAATACATGAGGACATGTTGATCTTAAATGCACAATATTACGTTCAGATTATTTGAAGCCTCTTTATATCTTCACACAACACCTCCTTCAGCCACACAAGTAGAATTGCCGAACCCCTAGACTATTTATAAACGTTGTTTCACTGGGTGGCTATGCAAAGTTTTAGCAGTCTGGTgactctttaaatgtgtatttgtaaatattttgttcttgcagttttgaagtattaaaaaaaaaaaaaaa

Function

symbol description
lin9 Predicted to enable DNA binding activity. Acts upstream of or within regulation of cell cycle. Predicted to be located in nucleus. Predicted to be part of transcription repressor complex. Predicted to be active in nucleoplasm. Is expressed in head and optic tectum. Orthologous to human LIN9 (lin-9 DREAM MuvB core complex component).

NR:

description
PREDICTED: protein lin-9 homolog

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0017053 transcription repressor complex cellular_component

KEGG:

id description
K21773 LIN9; protein lin-9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003651 True 3684 mRNA 0.40 14 13055994 13065554

Neighbor

gene id symbol gene type direction distance location
AMCG00003650 acbd3,LOC106571761 coding downstream 5602 13037692 ~ 13050392 (-)
AMCG00003645 NA coding downstream 87838 12926695 ~ 12968156 (-)
AMCG00003646 NA coding downstream 149105 12905372 ~ 12906889 (-)
AMCG00003644 NA coding downstream 164859 12883467 ~ 12891135 (-)
AMCG00003637 NA coding downstream 190241 12862807 ~ 12865753 (-)
AMCG00003662 xdh,LOC104966294 coding upstream 51812 13117366 ~ 13212180 (-)
AMCG00003660 NA coding upstream 151987 13217541 ~ 13233616 (-)
AMCG00003661 NA coding upstream 168519 13234073 ~ 13236047 (-)
AMCG00003658 wdr26,LOC103044372 coding upstream 185544 13251098 ~ 13270245 (-)
AMCG00003657 NA coding upstream 215897 13281451 ~ 13283514 (-)
G2235 NA non-coding downstream 21934 13033239 ~ 13034060 (-)
G2234 NA non-coding downstream 23230 13031928 ~ 13032764 (-)
G2196 NA non-coding downstream 154049 12898431 ~ 12901945 (-)
G2168 NA non-coding downstream 186043 12869501 ~ 12869951 (-)
G2142 NA non-coding downstream 637658 12417928 ~ 12418336 (-)
G2257 NA non-coding upstream 12094 13077648 ~ 13080021 (-)
G2266 NA non-coding upstream 34958 13100512 ~ 13101318 (-)
G2285 NA non-coding upstream 66066 13131620 ~ 13143528 (-)
G2287 NA non-coding upstream 107078 13172632 ~ 13178172 (-)
G2291 xdh,LOC107752765,LOC107592779,LOC107733164,LOC107674096 non-coding upstream 167941 13233495 ~ 13236993 (-)
G2236 NA other downstream 20505 13034953 ~ 13035489 (-)
AMCG00003625 NA other downstream 977842 12075319 ~ 12078152 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other downstream 1116211 11921991 ~ 11939783 (-)
AMCG00003618 NA other downstream 1266719 11743989 ~ 11789275 (-)
AMCG00003595 myo6,LOC106571274 other downstream 1939089 11063121 ~ 11116905 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 6242 13071796 ~ 13116660 (-)
AMCG00003667 NA other upstream 599189 13664743 ~ 13732039 (-)
G2373 esrrg other upstream 943904 14009458 ~ 14013021 (-)
G2500 NA other upstream 1745232 14810786 ~ 14811331 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other upstream 2450119 15515673 ~ 15591730 (-)

Expression


Co-expression Network