AMCG00003637


Basic Information

Item Value
gene id AMCG00003637
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12862807 ~ 12865753 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003637
ATGACAATGGACGAGGATTTTCTGCTGGCTCTCCAGCTCCAGGAGGAGTATAACCACGAAGCGTCCGGCTCCTGGGGGAATGGAGATGACGTGGGCAGGGAAAGCAAGAAGAGGAGAGTGGAGTCCAAGAGTGAGCTTGTTTCCTATCCCAGCACCCCTTTCCACCCAGAGAGACCGCTGTCCATCGTGGACGAGTcgtgggagattctggaccccAGCCCCGATGTCAGGGCCATGTTCCTGCAGTTCAACGACCTGTTCTTCTGGGGGAAACTGTCCGGAGTGGAAGTGAAGTGGAGCCCTCGCATGACACTGTGTGCTGGCGTGTGCTCCTACGAAGGCCGAGGAGGGCTGTGCTCCATCCGGCTCAGTGAACCGCTGCTCAAACTGAGACCCCGACGGGATCTGGTCCAGacaCTCTTACATGAGATGATCCATGCTTTGCTTTTTGTCACCCAAAACAACCGTGATCGGGATGGACACGGGCCAGAGTTCTGTAAGCACATGAACAGGATCAATGTGGCCAGTGGGACCAAAATTACTGTCTACCACAGCTTCCATGACGAAGTGGACCAGTACCGGCAGCACTGGTGGCGCTGCGGCGGGCCCTGTCAGACTCGCCGACCCTTCTTTGGGTATGTGAAGCGAGCCATGAACCGGGCCCCCTCTGCCCAGGACCCCTGGTGGGCAGAACACCAGCGCACCTGTGGGGGCACCTACATCAAGATCAAAGAGCCTGAAGACTATGGAAAGAAGGGCAAGAAAGGGGAAAAGGGCAAGAAGTCTGGGACACAGACTGCTCAAAAGGACAAAAGCTCTGGGACTCAGCCAGCTGAAAAGGAGAAAAGTGCTGGGAGGCAGACCGCTGTGAAAGGCAAATCTTCCAGCACTGCCACAGGGGCCAACATGGGTTTACCAGAACGGCCAGGTCAGAAAAGCCCTTTTAGAAGCAGCAGCACTGCCAGTGTAGTCCCAAATTCAGGCCCATTCCCTGCAAAACAAGCTCCAGTGGGTAAACGATCTGTTGGAAACACCAGGGTTTTTATCAGTGTTAATGGATCCCCTGTCAGGATTTCAACGACCAATGGCCAGCTGAAAAGGCCTCCCCATAATCCTTCACATCTTGCTGGGGCCAGGCAGAGGTCTGTCCAGGATCTCTTCAGTGCAAAAGGGCTCAAATCTCCAGAAAGGCCTGGTGTGAGTGCCAGCATCGCAGCCCCTCCACAACCACGAGGGTCCGGAACCCAGGGCCAATCTAATGAGACCAAAAAAGGAAGTTCCTTTATGAACGGATTGTCTTCAATAGACCTCACGCAGCAAGAGAGAGGGGCCAGTGGAAGTGCCAAAGATATGAAAAAGGACAATCCCCAAAACCAAGGCCACCCCAGAGAGAAGGACGCAGATGCTTTTGAACCTCTCAATTCCAAGTACTTTAAATCACCGGAAAAGGCAGCAGGGGGCCTCCCCAACTCCAGGAAAAGACCCAGACATGAAGGGGGCTCTATGCAcatttttgatttcttccagaAGACAACAAAAGAGTGGGACAAGCCGTCAACACCAAAGACTTCGAGTGGGGGAACCACAGCCAGCACTTCTGCTCCCCCTGTACAGCCTGGCCCTCTCAGCTCCGCCAGCCTTACCGTCAGTTGTCCGGTGTGCCACACCAGGGTTTTAGAGTCCAAAATCAATGAGCATTTGGATACCTGTCTCGTATGA

Function

GO: NA

KEGG:

id description
K24051 SPRTN; SprT-like domain-contaning protein Spartan

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003637 True 1719 mRNA 0.54 5 12862807 12865753

Neighbor

gene id symbol gene type direction distance location
AMCG00003640 NA coding downstream 2140 12858276 ~ 12860667 (-)
AMCG00003636 ttc13,LOC106571397 coding downstream 7490 12835517 ~ 12855317 (-)
AMCG00003635 epha7,LOC107567608 coding downstream 238118 12618786 ~ 12624689 (-)
AMCG00003638 epha7 coding downstream 267421 12583137 ~ 12595386 (-)
AMCG00003632 NA coding downstream 579315 12256469 ~ 12283492 (-)
AMCG00003644 NA coding upstream 17714 12883467 ~ 12891135 (-)
AMCG00003646 NA coding upstream 39619 12905372 ~ 12906889 (-)
AMCG00003645 NA coding upstream 60942 12926695 ~ 12968156 (-)
AMCG00003650 acbd3,LOC106571761 coding upstream 171939 13037692 ~ 13050392 (-)
AMCG00003651 lin9,LOC107678835,LOC107726751,LOC107697095 coding upstream 190241 13055994 ~ 13065554 (-)
G2142 NA non-coding downstream 444471 12417928 ~ 12418336 (-)
G2140 NA non-coding downstream 474876 12387608 ~ 12387931 (-)
G2079 NA non-coding downstream 794549 12068049 ~ 12068258 (-)
G2071 NA non-coding downstream 811316 12051245 ~ 12051491 (-)
G2066 NA non-coding downstream 835649 12026919 ~ 12027158 (-)
G2168 NA non-coding upstream 3748 12869501 ~ 12869951 (-)
G2196 NA non-coding upstream 32678 12898431 ~ 12901945 (-)
G2234 NA non-coding upstream 166175 13031928 ~ 13032764 (-)
G2235 NA non-coding upstream 167486 13033239 ~ 13034060 (-)
G2257 NA non-coding upstream 211895 13077648 ~ 13080021 (-)
AMCG00003625 NA other downstream 784655 12075319 ~ 12078152 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other downstream 923024 11921991 ~ 11939783 (-)
AMCG00003618 NA other downstream 1073532 11743989 ~ 11789275 (-)
AMCG00003595 myo6,LOC106571274 other downstream 1745902 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 1906454 10951084 ~ 10956353 (-)
G2236 NA other upstream 169200 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 206043 13071796 ~ 13116660 (-)
AMCG00003667 NA other upstream 798990 13664743 ~ 13732039 (-)
G2373 esrrg other upstream 1143705 14009458 ~ 14013021 (-)
G2500 NA other upstream 1945033 14810786 ~ 14811331 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017863 sprtn coding NC_007131.7 CM002904.2 4033193 ~ 4049862 (-)