AMCG00003640


Basic Information

Item Value
gene id AMCG00003640
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12858276 ~ 12860667 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003640
ATGAACGGCAAATCAACCAACGGCACCTCGGGCGGGGGCGTCCCGTCGGCCTGCATCGACGGGCTGCCCCCTCTGCCCAAGAGCCTGAGCGGCTTGCTGAACTCCAGCGGCGGCTCCTGGAGGGAGATGGAGCGGATGTACGCGAAGAAGACCATGATCCAGGACGACCTGAGCCGCGGCCGCAGCGCCGACAGCCTGGTGGCCAACAAGCCGGCCAACCTGGATGCCGCCCTGGCGCTGCTGAGGAAAGAGATGGATGCCAGCATTTCCCCCACCGAGCCCTCTCCCAAAAACGGCACTAGCAAGGACAAGTGGATCAATGACTCCTTCCACATCACCATCTAA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003640 True 345 mRNA 0.63 2 12858276 12860667

Neighbor

gene id symbol gene type direction distance location
AMCG00003636 ttc13,LOC106571397 coding downstream 2959 12835517 ~ 12855317 (-)
AMCG00003635 epha7,LOC107567608 coding downstream 233587 12618786 ~ 12624689 (-)
AMCG00003638 epha7 coding downstream 262890 12583137 ~ 12595386 (-)
AMCG00003632 NA coding downstream 574784 12256469 ~ 12283492 (-)
AMCG00003631 NA coding downstream 681644 12156367 ~ 12176632 (-)
AMCG00003637 NA coding upstream 2140 12862807 ~ 12865753 (-)
AMCG00003644 NA coding upstream 22800 12883467 ~ 12891135 (-)
AMCG00003646 NA coding upstream 44705 12905372 ~ 12906889 (-)
AMCG00003645 NA coding upstream 66028 12926695 ~ 12968156 (-)
AMCG00003650 acbd3,LOC106571761 coding upstream 177025 13037692 ~ 13050392 (-)
G2142 NA non-coding downstream 439940 12417928 ~ 12418336 (-)
G2140 NA non-coding downstream 470345 12387608 ~ 12387931 (-)
G2079 NA non-coding downstream 790018 12068049 ~ 12068258 (-)
G2071 NA non-coding downstream 806785 12051245 ~ 12051491 (-)
G2066 NA non-coding downstream 831118 12026919 ~ 12027158 (-)
G2168 NA non-coding upstream 8834 12869501 ~ 12869951 (-)
G2196 NA non-coding upstream 37764 12898431 ~ 12901945 (-)
G2234 NA non-coding upstream 171261 13031928 ~ 13032764 (-)
G2235 NA non-coding upstream 172572 13033239 ~ 13034060 (-)
G2257 NA non-coding upstream 216981 13077648 ~ 13080021 (-)
AMCG00003625 NA other downstream 780124 12075319 ~ 12078152 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other downstream 918493 11921991 ~ 11939783 (-)
AMCG00003618 NA other downstream 1069001 11743989 ~ 11789275 (-)
AMCG00003595 myo6,LOC106571274 other downstream 1741371 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 1901923 10951084 ~ 10956353 (-)
G2236 NA other upstream 174286 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 211129 13071796 ~ 13116660 (-)
AMCG00003667 NA other upstream 804076 13664743 ~ 13732039 (-)
G2373 esrrg other upstream 1148791 14009458 ~ 14013021 (-)
G2500 NA other upstream 1950119 14810786 ~ 14811331 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017862 fam89a coding NC_007131.7 CM002904.2 4026408 ~ 4031475 (-)