G2196


Basic Information

Item Value
gene id G2196
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12898431 ~ 12901945 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU2653
TTCatcagtatttttattattaaaagaagaaacaatCACACACTCCATTACATGAAAAATGACCACATCCAAGAATCAAAGTGTGGCTAGAAAGTTTGCTATCTGCAAAACATGAGCAGAATGGACAGTGGTACTGACCAAATCaattatataacaaaacaacaaaaactatacatttattacagtGTTGCAGAAACTTTCATTATGAAATTTCCTCAAGTGTTTaaacttcaaaaaataaaataatgcattatgttCAGTAAGATGTTgagaaataaatagtattttattcagGGAAGGCGGCAAAGCAGAGGTTTTTGACCTGTCTTTCACATATAAAAGATTGATCATTGAAACATAAACAAGCCGTTCCTTCAACCAGCCTGGCGAAACCGTCTTgaagcttgtttgtttttatcctgtGAGTCAAATTCATTcagctcaatctccttcttTCGTTTGCAAGGGAAGACCCATGGGTCTGGGTCTGGGTCCTAGAAGCTTTTTTAAAACCAACAggacatatataatgtatatattatatatcctTCAGTGTGCACAAGGTCTACTTGAATATTACAGATGGACTTTTCTGCTAATATATTTAGCATACTAAATTGAAATCCTGGGGATCTGATTTTcatacagattttgttttgtaaacaaaattatatattaatttaaaaccagaTTATTTCTCCCCATGCAGTTGGAATAGCAATTACTATTGACTGACTGCTGTAATCCGTGCAGCAGTGTAGAAAACACAAAGACCCTTCCTACACTGTGAGGGGGAGGACTCACAGCACAATGCAAAGAATGAGATCACTGTTTATGTAGCAGCAGTAAACTAgcataatgtgtgtttttcaggaGTCTAGCAACAAACGGTTCGACTTCAGACAAACATTAATGGTGGAAGGAACTGCTAATGGTGGCAAGATTTAGTCTGGTTACAGATGTGTGGAGAGAGTGCGGATCTTGATATCATATTGGCGTTGAAGACCTGTGTTGAGGACTCCATGATGGAGGATCCAGATTTCTGTCTTTCTGAAGTCTTTTCAGTATATAAAGTGCATGTATGCTTTTAGGTGCTTGGCACATTGGCCATAAACTTGTAGGTCAGAATGagcactttaaaaacacaatcttCTAAGAATCCATAAATCTAACCTTTCAATCCACCGTCTTGTATTGCTTTCAAAatgatattaaatcaaattaggGGCTTGCGTTTTGCCTTGactgaaaaacacataaaacaaacgTCCCTAATTATAATGTACATCACCAAAGTAAtgttgtaatatataaaaaccCAACCTAGTATCTACAAGAACTCTTGACAGGCAGGCTGACACACATCCTGTGCTGTCAATCCACTAGCTTATTTCCATAAATCACAACCAACAGAGCTCTAACACCACAGACAGAACTAACAGCTCTCACTACTAACACTGCAGACAGAAATGCAGGTTTCCAATGAGCCAGAGAGTCCCTGTGTGTGGCACACCAAGGAAACCCTGTCTGACTCTGAACACAGCTACTCCCAGGGGGAATCCCTGTCAAAGCTGGCAATGATGTGCCATCCATACAGTAAGGCTCGGACTCCTCTCATTATCGATTATAGATGTAAACGGTATAGACGAAAGGGTCCCCAATCCTGGACCCAGAGGGCTGCAGTGCAAAAGATTTTTGGGAAAAGCAGCCTCgttcaattaatacaatattgagTTAAATTAGGTACTTAGGAGCCCAGGTTGAATGACACCTTGAAGATACTGAAACATTTCAGGACCAGGACTGGGGACGTGAAATTCAAACTATAAATCATagaacctttttgtttttacagttctACAAGTCAACCATTAAAGACTACATGATTTAAATCTGaatatgcacatatacatattcataattatacacacacacacacacacacacacacacacacacacacatccacagAAACAACAGTCTGTATTAATATTTAGGTGGAGGTTCACAGAAAAACAGTAGCAGAAGAATTTTTAGCAAACCTGGTGAGGGCCAAAGACTGACAAAACCAGTGGATTGCTGCACACTCTTACATTAAAATTTTTCTCTGAACCTCTATGCATTAATAAAGactatacattttttgaaaaatatccTGTTTGTGCGTGTTTGTCTGACTTTCAGACTTGGAAGTTATTGGATTACATATTGTGACACAGTGATGGTTTCGTACAGGCGATAAGATATACAAAGAAGAAATGTCTCCCCCCTCCTGGAGCTCTTGTACAGTAACCAGTTTAGGTGTACTGGGATCTGTCACTCACACACCTGACAGCGTGGGAAAAGAGACACACCTACAGGCACTAATGAATGGAGCCCTATAAAGCGGCAGCTCTCCAGCTGTacctgagggggaaaaaaggagggCGTTTAGGAGAACTTCCGAGCTGCAAGAGGAGGAACCCGTGCGAACCCGTGCGACTCTGACCTGCTAACTGCATAACAACCAGTCTGTGCTATACCTTCCTTTGGGATTTGACCTGGACTACACTATGACTCTGATTATGACCTTTGACTCCTGCTTTCCCACAATGACTATGAGGCTGCTTAACAACTGCAAGCATTACCTGACGGTTTTGATTGGGGGACCGAGAAGTGGCCTGAGCATCGCTAGGGATTTGCTTACAGTGTTAGCTATTGCCCAGACTTGGACTAGGATTTCCTGTTGTTTCCACAGCCTTTGTCATGTCATCCGAGACATACAACCCAGGTCCCACACCCTGCtctgtgtcacaatatatatagatacatacatgtgtgtgtataagtatgtataaatatattatagtcaatacattattactataattgacagaatattaattaaaagacaTCTTCTCTTCCCTTATTTACAAGGGAACAAGCCGAGATCCTTGCTGAATGGTTTAACACAGAAATACTCTTCAATAGATAAGACAGACAACAACGAGAACTAAAATCCAGAATTACACCCCAAATGTTTGAATAAGGCGCCTAACTGGTCCTCCTGAACTGTGTCCTCAGTTGTTCCTGAcctttgttctttgttcttgGGAGTCCACAAGACTTGTCACAACTTAAATGTGTGTTAACAATGATTAAAATAGGTTTGGcaacactaaaaaaaaacattaaactaaaGAGAAACAGACATACAGGTGAGTAAGTTGATAGCAGACCTCTTTACCTCTTAAAAGGATTTTCAATTGTAAGAAATTGTGTGAACAACTTTAGTGGTTTCAACCATAAAGCTGTCACACTGGCAGTCTACaaagtctcttttttttttttttttttttaaaaggcctTTTTCTTGATCCTGCTGCAAATGTCTTTGCTAATTTGGCATTGTGGTAATGAATAATGAAGGCAATAGTCACTCCCTGCAGCTGTACCTCTCTGAAACATGGCACTCAGACTACAGTCGAGCAAGGACTGTTTTCCGGATTGGGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2653 True 3493 lncRNA 0.39 2 12898431 12901945

Neighbor

gene id symbol gene type direction distance location
AMCG00003644 NA coding downstream 7296 12883467 ~ 12891135 (-)
AMCG00003637 NA coding downstream 32678 12862807 ~ 12865753 (-)
AMCG00003640 NA coding downstream 37764 12858276 ~ 12860667 (-)
AMCG00003636 ttc13,LOC106571397 coding downstream 43114 12835517 ~ 12855317 (-)
AMCG00003635 epha7,LOC107567608 coding downstream 273742 12618786 ~ 12624689 (-)
AMCG00003646 NA coding upstream 3427 12905372 ~ 12906889 (-)
AMCG00003645 NA coding upstream 24750 12926695 ~ 12968156 (-)
AMCG00003650 acbd3,LOC106571761 coding upstream 135747 13037692 ~ 13050392 (-)
AMCG00003651 lin9,LOC107678835,LOC107726751,LOC107697095 coding upstream 154049 13055994 ~ 13065554 (-)
AMCG00003662 xdh,LOC104966294 coding upstream 215421 13117366 ~ 13212180 (-)
G2168 NA non-coding downstream 28480 12869501 ~ 12869951 (-)
G2142 NA non-coding downstream 480095 12417928 ~ 12418336 (-)
G2140 NA non-coding downstream 510500 12387608 ~ 12387931 (-)
G2079 NA non-coding downstream 830173 12068049 ~ 12068258 (-)
G2071 NA non-coding downstream 846940 12051245 ~ 12051491 (-)
G2234 NA non-coding upstream 129983 13031928 ~ 13032764 (-)
G2235 NA non-coding upstream 131294 13033239 ~ 13034060 (-)
G2257 NA non-coding upstream 175703 13077648 ~ 13080021 (-)
G2266 NA non-coding upstream 198567 13100512 ~ 13101318 (-)
G2285 NA non-coding upstream 229675 13131620 ~ 13143528 (-)
AMCG00003625 NA other downstream 820279 12075319 ~ 12078152 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other downstream 958648 11921991 ~ 11939783 (-)
AMCG00003618 NA other downstream 1109156 11743989 ~ 11789275 (-)
AMCG00003595 myo6,LOC106571274 other downstream 1781526 11063121 ~ 11116905 (-)
AMCG00003586 NA other downstream 1942078 10951084 ~ 10956353 (-)
G2236 NA other upstream 133008 13034953 ~ 13035489 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other upstream 169851 13071796 ~ 13116660 (-)
AMCG00003667 NA other upstream 762798 13664743 ~ 13732039 (-)
G2373 esrrg other upstream 1107513 14009458 ~ 14013021 (-)
G2500 NA other upstream 1908841 14810786 ~ 14811331 (-)

Expression


Co-expression Network