AMCG00003777


Basic Information

Item Value
gene id AMCG00003777
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17970812 ~ 18000814 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003777
AGTTTGAAGTACAGAATCAATCTTGTCGTCACTGCCGGAAAATCTGAACACTGCACACCAAGCATGAAGAAATTATATAAGCACGCCTACTGCCCCAAACCAAACACCAGGCACAGTCTCATAAGGACAGAAAAAGATGAAAACTGCGCCCTGCTCAATGAAAAGGGACAGACCATTGACAGTCCGCTGGCATCTCTGATGAATACAGTCTTCATTTTCATCTTTACATTGTTGAGGGAGTTCCCCAGCACAGTCGACCCTGGAGAGCACATGAAGTTAAAGGAGAAGAGGGTTACGCAGCACGACTCCAAACAGTCAGACCTAATAACCTTCAGTTCTGCACACTGCCATTTCCGAGAGATGCtcttcaatgaaaataaatgcgaggaggaggaggaggaggaggcagagggtGAAACTCCGGCTGCAGCGCACGACACGTCCTCGGATCCACGTGGAACCTGTCAGGGACCAAAACacgtccgtctgtctgtccgtgCGGCCGCACTGCAGGGCGGCGGGTCCGGCTCACAGCCCACAGCGCAGCAGCCACCATGGGACAGGCGCACTGTGCGGGAGGCCGGCCGAGGCTCCGCGGACGCGGGTCAGATGCCCAGCCTGAAGCCCCTGCCTCCACTGGGACATTGGAAAACCCCTTTGGCACCGGGGATGAGGAGCGCAGAGCTACATCCTGGACCGACTGAAGGAAGGACAAGGGAGCCCCGATCACATGACAAGGGAGCAAGCGGGCAGCTGGACGGGCTGGAGCTGATGGCCCTGCTTTCTGACTTCCTGTCCCATCAGGACCCAGCACAGCAGTCAGCAGAGTCTgtgATCTCGACGGTGGACGTCCTCCTTCAGACTCAGGACCTCAATCAGGATGGGCTGCTGGACCCCTCGGAGCTGCTGTCCCCCGCCTCTGAGCGCCACGCAGCCCCTCTGGATGTCGACGAGCAGGCGCAGGCACCGGAGACGGGCATGGATGCTGACACGGGGGCACCGGAGGAACAGGGAGCCCAGGAGCCGCCCTCCCCACAAGCCAagaatgaggaggaggagagtgtCCCACAAGAGGAGCCCCAGCCTCACCTTGAAGCTCCAGAACCACCAGGTACCAACCATGACAGCCAATTTCAACAACAGCTGGAGCTCCAGAACCCAGATGGTGAGGTTCTAGAACAGCACCACGAGCAGCCTGCGCATCAGGGCCAGTCTGAGATGTGACCTTCGCCAACGGCAGGAAGGGGTCAGACTTAGGAGACGCAGCTGTCCGCCTCGCCATGCCACCCCAGCAAAAAGAGAGGGGAGCTGCCAAACAAACAGGAGGGGAGGAAGAGATtggagggaaggggagaggagaggaggggatgGGATGGGAAAGCGGAGATTAGGGGAGAGGAGATGAGAGGAGTACCACTTTTTATGTAAAGCTTTGTGCACTTTTTTTGGTACTGAACCACCAAAGcccaaaaaaaaatcaagaaagaaacaaaaagtaagGTTTTCGTTACgctgtgatttgtattgtttgttttgttttgcttaattttgtttgtttccttttcttgggactgctgtttttttttaaagatgaaccttacacatacacacttacacttaaacacagacacacacacagacttgaCTTCATTAGTTTTGGAAAtgcaataattgtttttgtttgcttggcCTGTTGGTTTGTTCATCATCTTTATTCACCATAGTAAGCCAAGTGTTTTTCATTGCAGTAGTTTTTCCACTATGGTACGACTGACAATaggaaatggaaaaatgaattAAGGGCAATGCAGGGCCTGACCTCTGGAGGCcgcaaaccagtcctggagtttGTGTTCCGCCAGAGAGGCCCTTTTAACGATGCGCACATTTGGTTCCCTATCATTTCATTCTCTCACGCTTCGCATGTCCACGCATTCAATGTCCATTATGATTCATGCGACTCTTTTAGCTCCTTGACTTGAATAAATATTAAGCACTCAGAAATTATGTCAGATATGAAGAAGGTcggcagccctggtcctgcagaggcACAGTCCCGCAGGTGTGACAGGTATCTCTCTATCCACAACCGCTGCCGAATTAATTCACTCTCCACTCTCAAGTGCTGTGGAGTTATCAAAAACCAGAAGAGTCCTCACAGCCCAGGACCAGCATATCTGTAAATCGAAACATAATGAATAACCTTGACTTGACTTTACATTTGGGTGTTAAATTTTGAATTACAATACCTGTTTCCAgaatcattattaatatgacAAGTATTTTTGCTTGATGGGTGGGTTTACTCTAAAAACGTCCAATCGGCCCCATCGGTCTAATCAGCCCGGATTTTCATAAGACATTGTTTTTTCATAAGACATTACATTTCTGCTATTGGAACAAGCGGTTTGTGAAATGGATGTTATGTTTTTCAcctgattttaattattaaaaagaaggaagaaaaaag

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003777 True 2470 mRNA 0.50 9 17970812 18000814

Neighbor

gene id symbol gene type direction distance location
AMCG00003776 NA coding downstream 73897 17889983 ~ 17896915 (-)
AMCG00003770 LOC107585532,LOC107675519 coding downstream 94226 17875147 ~ 17876586 (-)
AMCG00003768 NA coding downstream 179755 17789939 ~ 17791057 (-)
AMCG00003764 NA coding downstream 186222 17779479 ~ 17784590 (-)
AMCG00003765 NA coding downstream 267586 17680446 ~ 17703226 (-)
AMCG00003778 LOC107594834 coding upstream 3357 18004171 ~ 18027626 (-)
AMCG00003780 NA coding upstream 104274 18105088 ~ 18124295 (-)
AMCG00003781 LOC103364986,LOC107735240 coding upstream 156044 18156858 ~ 18161968 (-)
AMCG00003783 NA coding upstream 162812 18163626 ~ 18175704 (-)
AMCG00003789 NA coding upstream 208887 18209701 ~ 18215100 (-)
G3170 odc1,LOC107687948,LOC107753348,LOC107758719,LOC107687839 non-coding downstream 30100 17935840 ~ 17940712 (-)
G2972 NA non-coding downstream 711269 17257937 ~ 17259543 (-)
G2973 NA non-coding downstream 716047 17254271 ~ 17254765 (-)
G2902 NA non-coding downstream 928263 17041437 ~ 17042549 (-)
G2903 NA non-coding downstream 973208 16996790 ~ 16997604 (-)
G3257 NA non-coding upstream 409056 18409870 ~ 18418066 (-)
G3266 NA non-coding upstream 438287 18439101 ~ 18439510 (-)
G3270 NA non-coding upstream 544539 18545353 ~ 18545976 (-)
G3354 NA non-coding upstream 874768 18875582 ~ 18878573 (-)
G3374 NA non-coding upstream 948958 18949772 ~ 18950252 (-)
G3181 NA other downstream 25870 17942577 ~ 17944942 (-)
AMCG00003751 NA other downstream 830430 17137248 ~ 17140382 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other downstream 1099337 16868332 ~ 16871475 (-)
AMCG00003734 NA other downstream 1342411 16607410 ~ 16628401 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other downstream 2379082 15515673 ~ 15591730 (-)
AMCG00003784 NA other upstream 134565 18135379 ~ 18142681 (-)
AMCG00003782 ctsb other upstream 145846 18146660 ~ 18152381 (-)
AMCG00003825 NA other upstream 1361004 19361818 ~ 19373225 (-)
G3517 LOC101154678 other upstream 1424149 19424963 ~ 19425366 (-)
G3523 NA other upstream 1443202 19444016 ~ 19506753 (-)

Expression


Co-expression Network