AMCG00004058


Basic Information

Item Value
gene id AMCG00004058
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30924788 ~ 30928491 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004058
ATGGTCTCCGTGGGGGGCCTGTACTTCGTGGTGACGCTGTTCCTGGGCAGTTTCTTCGGCAGTGTGTTCATGCTGGCGCCTGTGCTGCCCCTCATGCTGgCACTGCTGGAGCTGGTGTTTGGTGTGAAGGTGGTGATCACGGGCGATGGCTTCGTGCCGGGTGAGCGCAGCGTCATCATCATGAACCACCGCACCCGACTGGACTGGATGTTCCTGTGGAGCTGCCTGCTGCGCTACAGCTACCTGCGGCTGGAGAAGATCTGCCTCAAGGCCGGCCTGAAGGCCATCCCCGGCTTTGGCTGGGCTATGCAGGTCGCCTCCTTTATCTTCATTCACCGGCGCTGGGAAGATGACCGGCGCCACCTGCAGGCCATGCTGCAGTACTTCTGTGACATCAGGGAGCCTCTACAGCTGCTAATATTCCCAGAAGGCACTGACCtcacagAGAACACGCGTGCCCGCAGTGACCAGTTTGCTGAGAAGAACGGGCTGCCGAAGTACGAGTACGTGCTTCACCCTCGCACCACCGGCTTCACCTTCATCGTTGACATGCTTCGCAAAGGTCAGCCAGGGGTCAGGGGCGAGTGCCAGGGTGGGCGCAATAgagacaACCTGGACGCAGTGCACGACATCACGGTGGCCTACCCCCATGTCCCGCCTCAGACGGAGCGCCACCTGGTGGGTGGGCTGTTCCCACGCGAGATCCACTTCCACGTGCGCCGCTACCCAGCCTCCGCACTGCCCACCGACGGCCTCCAGCTGCAGGCCTGGTGCCAGGAGCGCTGGCAGGAGAAGGAAGTGCGCCTGCGGGACTTCTACACCGGGGAGCGCCGCTGTTTCGACGCCTCGGGCCGCAGCCGCATCCCGCCCTGCAAGTCTGAGGCCCGGGTGCTGCTCATCCAGGCTGCCTCCCTGCTGTACTGGAGTGCCTTCATTGTGCTCTGCTGCGTGGGGCTCTGCCTCTCGCCTGCACTGCGCGCCTACTTCCTCGTAGTGGTACTGTTCTACCTCGGCCAGCAGAAGGCGATAGGGGGGCTGGAGCTGCTGGAGCTGGCCTGCCACCGGAGGAAAGAGGGACAGGCTGGGAAGGGAGAGGAGTTAAATAAGGAGATGAAAAAGATTGTAGAAGAGGAATGCAAGGACATACATGCCTCAGAGAAGaaggactgagagagagagagagagagggagggtgagggGGGGCGAAGGTGAACGAGG

Function

GO: NA

KEGG:

id description
K13513 LCLAT1, AGPAT8; lysocardiolipin and lysophospholipid acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004058 True 1218 mRNA 0.62 5 30924788 30928491

Neighbor

gene id symbol gene type direction distance location
AMCG00004059 NA coding upstream 11637 30897076 ~ 30913151 (+)
AMCG00004051 bpnt1 coding upstream 75752 30842720 ~ 30849036 (+)
AMCG00004049 NA coding upstream 117555 30805091 ~ 30807233 (+)
AMCG00004050 NA coding upstream 122579 30782054 ~ 30802209 (+)
AMCG00004045 NA coding upstream 202461 30705140 ~ 30722327 (+)
AMCG00004064 NA coding downstream 16981 30945472 ~ 30947477 (+)
AMCG00004057 NA coding downstream 33142 30961633 ~ 30969204 (+)
AMCG00004065 NA coding downstream 46485 30974976 ~ 30990100 (+)
AMCG00004067 NA coding downstream 101927 31030418 ~ 31039737 (+)
AMCG00004066 NA coding downstream 118654 31047145 ~ 31062709 (+)
G5297 NA non-coding upstream 146518 30778047 ~ 30778270 (+)
G5291 NA non-coding upstream 183915 30740564 ~ 30740873 (+)
G5272 NA non-coding upstream 371574 30552977 ~ 30553214 (+)
G5271 NA non-coding upstream 379263 30545287 ~ 30545525 (+)
G5248 NA non-coding upstream 648506 30275108 ~ 30276282 (+)
G5417 NA non-coding downstream 64115 30992606 ~ 30992900 (+)
G5482 NA non-coding downstream 857843 31786334 ~ 31786883 (+)
G5490 NA non-coding downstream 1100513 32029004 ~ 32029301 (+)
G5493 NA non-coding downstream 1262829 32191320 ~ 32191542 (+)
G5499 NA non-coding downstream 1340257 32268748 ~ 32269071 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 29961 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 617613 30296867 ~ 30307175 (+)
G5245 NA other upstream 653264 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 1383430 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 2240807 28640174 ~ 28683981 (+)
AMCG00004079 NA other downstream 1471914 32400405 ~ 32402383 (+)
G5642 NA other downstream 2201629 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 3924372 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 4823959 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 5098788 36027279 ~ 36045282 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006302 lclat1 coding NC_007124.7 CM002897.2 51956397 ~ 51963460 (+)
grasscarp (Ctenopharyngodon idella) CI01180000_03223456_03224643 LCLAT1 coding CI01180000 null 3223402 ~ 3224643 (+)