XLOC_006302 (lclat1)


Basic Information

Item Value
gene id XLOC_006302
gene name lclat1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 51956397 ~ 51963460 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012298
GGAAACGATGGCTGCCGTGGTGAACATGGGGCCAGGGCCGCGTCTGCTGGAGGATTTGCTGCGGGACTCAGAGTGACTGTGCGCGCCTGCAGGAGTGCGGAGGAGCCGCTGATTTCCTGAGTTTCTCCTGCGGTCAAACCGCGCTGAAgctgaGGATGGTGTCTCCTCgtggtgtgtgtttcctcctcttcctcctgctgGGCAGTGTGTTCGGCAGTGTGTTCATGCTGGGTCCGCTGCTGCCGCTGATGCTGCTGTCTCCGTCACGCTACCGCTGGATCACCGACCGCATCGTGGCCACCTGGCTGACCTTACCTGTGGCGCTGCTGGAGCTGGTGTTGGGGGTGAAGGTGGTCGTCACGGGCGACGGGTTTATCCCGGGCGAGCGCAGCGTCATCATCATGAACCACCGCACACGCCTGGACTGGATGTTCCTGTGGTGCTGCTTACTGCGCTACAGCTACCTGCGGCAGGAGAAGATCTGCCTGAAGGCGGCGCTCAAGAGTGTCCCGGGCTTcggctggGCGATGCAGGTCGCCTCCTTCATCTTCATCCAGCGGCGCTGGGAGGACGACCGCACACACATGAGCAACATGCTGCAGTATTTCTGCCGCATCAGAGAGCCGGTGCAGCTGCTGCTGTTCCCTGAGGGCACCGACCTCAccgAGAACACTCGCGCCAGGAGTGACGAGTTTGCGGAGAAGAACGGGCTTCAGAAGTACGAGTATGTGCTGCACCCGCGCACCACCGGCTTCACCTTCATCGTGGACACACTGCGCGGAGggGATAATCTGGATGCGGTTCATGACATCACAGTGGCGTATCCTCAGAATATCCCGCAGAcggagcgccacctgctggcggGTGTGTTCCCGCGCGAGATACACTTCCACGTGCAGCGCTTCACGGTGGCGTCTGTGCCCGCGGGCGCCGCCGGTCTGCAGGCGTGGTGTCAGGAGCGCTGGCGGGAGAAGGAGCGGCGGCTGCAGCGCTTCTATGAGACGGTCCCGCGCCGCTTCGATGCgcccgctgtgggtgtgtgtgtgcgtgagccgTGCTGTCAGAgcgggcagtgtgtgtgtgtgccgcgCTGTAAGAGCGAGGGGCGTGTGCGCATCATCCTGGTGGCGTCGCTGCTCTACTGGAGCGTCTTCATCACCGCCGCCTGCGCCAGCCTCTGCCTCTGCCCCCCCGCACAATTCTACTTCCTGTTCATGGTCGTCTTCTTCCTGTGTCAGCAGCGGTTCACCGGCGGCCTGGAGCTGATGGAGCTGGCCTGCCACCGATACTGGAGCCGCCGCAGCGCCGACAAGCAGgagtgaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcatgacaGTGTATAGGTTATTGAATGTGTGTATAACTgatgcataagtgtgtgtgtgtataaatgatgaatgagtgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagagctgctgctcctcctgcTGGCTGAGAGGCTGAAGTGCAGCACAACAGACACTCATATAAACAGAACAGCAGCTCTTCATCCTCCACTCTTCATCCTCGCGGTGACCTTTGACTGTCAGCTGTAGAGGACAGCGGTGGACACtgatgtgacacacacacacacacacacacacatttacttgaTCAACACTTGCTCTTTAAAGCTGCAGATAATGAAGAGCTCagaggaggtgtgtgtgtgtgtgtgtgcgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtttggactcCTCTGAGCTGAGTACTGTTCTCTGCAGCGCACCCCAGCGCttcactcctcctcctcctcctcctcctcctcctctgtgtgtgtgtgcgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgtggtgGTGTGTCGGCTGGTGTGTGTAGTCCTGCAGTATACTCGGGTGTTTTAGACGATCCTCTTTTATTATGGGCTGTGTCTGTCTGTTATTATTAGTGTTTTAGTTGAGGATCACAGCCATAGCGGACGCGCACACTGCTCATGGAGAACAGTGTGGGGAAGACATGCACATcatgtagagtgtgtgtgtgtgtgtgtgtgtgtgtttgtttatttgtatgtatgtgtgtgtgtgcaatgtgACAATCCTCATGTAAATGAATCAGGGCAGTCGCTGGCTCAACATTACACTGCATTATGGGAGGATTAGAGTGTGttctgacctttgacctcttGTCTTTCCTCACTGATGCCCATTATTGTTTTAAGTAACACACAgatggagaacacacacacacacacacacacacacacacctgtatcagTCATCAGCACATGTAACACCAGTACACAGTGTTCTGCACTGAGAGTGTTTattctgtgtgtgttgtgttgatgagtgattgcagtgtgtgtgtgtgtgtgtgtgtttctgttttcctcctatgtgtgtgtgttgttcagcTGTGGTGTTCTGACCTCTCTGGGTCGCAGTGGGCTGGTTTATACTGTGTGTTGAAGAGGAAGATGGAGAAGCACAGAAACACCTTCATCATCAGGAGATCAGCCTCTGATCAGTCAATCAATAATCAATACTCTCTCTCCACACCTCTGCTGTGTCCTCTGCAGTCTGTGTGTGTCCGTCTGTCCTCATCTGGCCGCATTTGTCATCTTGAGTATGTATTTTTCTGATGTATAGTATGATGAATGAGTCCAGAATAAACAGGCCTGGCGTTA

Function

symbol description
lclat1 Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity. Acts upstream of or within endothelial cell development and hemangioblast cell differentiation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in hematopoietic stem cell. Orthologous to human LCLAT1 (lysocardiolipin acyltransferase 1).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0036149 phosphatidylinositol acyl-chain remodeling biological_process
GO:0060217 hemangioblast cell differentiation biological_process
GO:0001885 endothelial cell development biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0008654 phospholipid biosynthetic process biological_process
GO:0016024 CDP-diacylglycerol biosynthetic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity molecular_function

KEGG:

id description
ko00561 Glycerolipid metabolism
ko00564 Glycerophospholipid metabolism
ko01004 Lipid biosynthesis proteins

ZFIN:

id description
ZDB-GENE-081211-2 Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity. Acts upstream of or within endothelial cell development and hemangioblast cell differentiation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in hematopoietic stem cell. Orthologous to human LCLAT1 (lysocardiolipin acyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000103320

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012298 True 2789 mRNA 0.55 6 51956397 51963460

Neighbor

gene id symbol gene type direction distance location
XLOC_006301 LT631684.1 coding upstream 74638 51853716 ~ 51881759 (+)
XLOC_006300 NA coding upstream 160996 51741554 ~ 51795401 (+)
XLOC_006299 pwwp2b coding upstream 225099 51710725 ~ 51731298 (+)
XLOC_006298 NA coding upstream 330830 51617783 ~ 51625567 (+)
XLOC_006297 nkx6.2 coding upstream 372133 51579851 ~ 51584264 (+)
XLOC_006303 klhdc3 coding downstream 18304 51981764 ~ 51988216 (+)
XLOC_006304 npas4l coding downstream 42793 52006253 ~ 52017013 (+)
XLOC_006305 CABZ01089777.1 coding downstream 97574 52061034 ~ 52069970 (+)
XLOC_006306 CABZ01092745.1 coding downstream 108511 52071971 ~ 52105015 (+)
XLOC_006307 NA coding downstream 157377 52120837 ~ 52136375 (+)
XLOC_006296 NA non-coding upstream 493730 51444994 ~ 51462667 (+)
XLOC_006295 NA non-coding upstream 516504 51433834 ~ 51439893 (+)
XLOC_006294 CABZ01094390.1 non-coding upstream 525080 51428398 ~ 51431317 (+)
XLOC_006308 NA non-coding downstream 206489 52169949 ~ 52174571 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_03223456_03224643 LCLAT1 coding CI01180000 null 3223402 ~ 3224643 (+)
bowfin (Amia calva) AMCG00004058 NA coding CM030121.1 CM030121.1 30924788 ~ 30928491 (+)