AMCG00004121


Basic Information

Item Value
gene id AMCG00004121
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34119571 ~ 34130023 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004121
TTGTGATTGACTGATTTTCTATACTGCATCATTGCGGCTTCAGTTCGTTGTGTTGAGCTGGCTGGTGTGTTGTCCTGCGCTGAGATGCTTCAGTGTCGGCTCATCTCTGTCATCAAGCGTCTCTCTGCGCCGTCCGCGGGCGGAAATGACGTCGCTGGACGATGTTGCGCGTGGACGCCGAACGCGCACGACGCGCACGTGAAGATGGATCGTCCCACGAggcCACAGATGGATGCAAAGCTTCCTGTGCCATATGCTTTATGGCCTGTGGACCTAAAGCTCAAACACGTGGACTGCAATCCTGGAGATACCCTGGTACATTTCCAGGGTCAATATCTGACCATATGTGAGCTGGACTACAATATACTGCaagtagaaatacaaaacacagagaaaactACAGGGACTGTGGAGCTGGGGGGGTTCTGCTTAGTAGAAGACACTTTCTTTGGTCAGTGGTATAGAGGAAGAGTGCAGAAGAAACACAGTGATTTATATGACGTTTTTCTCATTGATCACGGAAATGTTTTGACCGTTGATAGTAGCCATCTGGCTTCTGCTTGTGACAAGTTGTTTATGCTTCCCCCCAAAATTACCTGTGGCTTTTTTGCCAATATGCTCCCTGTGGGAGAAAAGTGGGATGTCTTGACAGTAAAGTTTTTCTCATCTTTAATAGGATCTGAGATCACAGGCTATATCCAAGCTGTCTTGCCACACAAAGTGCTAGTATTGGAAGCTCCTGATATTAACACAGATCTCACCAGACTGGGATTTGGGAAGGGAGTAGATAAGGACACATTCCTTCTACTTGTGGAAATGTTGACAGAGGTACCtcttaaacaaaacagtgaACCTGTTCCGGACTTGTTAATTGAAAAGCAAGTAGGACAGGAATTCACTTCTAAACCTTCAAgctttcagtgttttcagaatATATTGTCATATTGTGGTCCCAAACTGTCTGTTGGGAGAATAGAAAGAGCTAAAATAACTGCAGCAGTAAACCCCAGTACATTTTACTGTCAGTTAATGAGCATGGAACAGGATCTTAAGGAAATGACTGAAACTCTGTCACAATTGTGCGATTCTCAATGCAAAGAACTTCGTGAGAAACATGCTGGTAACATGGGGGTACTGTGTTCTGTTAAAGGGAAAGATGAAAAGTGGCACAGAGGTTTTGTGCAACAGGTTGTTCCTGATGGTCAAGCAAGAGTATTGTTTGTTGATTATGGTTTTTGTGACTCTGTTAAAGTAGAGAACATTCTTCCACTAACTTCAGATTTTCTAGGACCATCAATTATGGCTTTCCCTTGCGCATTGTCTTGTCAAAGTGACCAGGACAAAATGGCACAAAAATTGCAATTAGGTGAATTTAAGAGAGGATTGTTAGGTGCCACTTTGGACATTCATATAGACCATTTTAGCACACAAGAGAATCTTTATTTTGTCACACTGTTTAGTACTACAGAAAAAGCAGACCTGGGCTTTCAGGAAATGgtcagaaaatgtgaaaaatccaCTCAAGAAGAAAATGGCGTTTGGGAAGTGGAAAATGAcactgaaaatggaaatgttttacaatgtaaCCGAAGTAAAGAAAATCCGAAAGATGCTACCCACATTAAAGAAATGAAGAAGTCTTCCTATGTAGGTTTTGTAGAGCATGTTGTAAACCCATCTGATTTCTGGATGAGAACAGAAGAACGTAACAATGCGTTTGAAGATATGATGGACAAACTTACAAACTATTGCAACAGCATGGAGCTAAATGAAGGCACAATGAACTATCCTGAACCTGATTCTCTTTGCTGTGCTATGTATGAAAAGGATATGCATTATTATAGAGCTGTCATAAcagatgtatttgaaaatgggGCAGAAGTGTTTTTCATGGACTTTGGAAACACAGAGAAGGTTCCATACATGTGCATTAAAGCTCTGCCGTTGAGGTTTACAGAGGAGCCTGCGTTTGCTCTTCATTGTTCTCTTGCTAATGTGAGTTCCATGGAAGATGTATGGACCGCCAATTCAACAGATTTTTTCAAGAATATAGTCTTACATAAAGctctcttggcacagattctccACAAAAATAACGATAAATACATTGTTGAATTATATGAGAAAAGAGAACCAAATAACATTAGTATTGTCTCACTTATGGTCACGGCTAAGATGGCACAGTACTGGAGCTACGTGCCCAGATACAATGACCAAATCTTAGCCAGAGAGTACCGTGCCCAACAGTCAAAAAGGAGGGTCCCCACAAGTGGTCCAGTTGTGAAGAAATTACACACCCCTCCCAATCTTAGAAACGCCAAACATCAGAAAGAAATTCGAGAGACTCAAAATAGAGTGCATACAGAAGAACCTGCAGGATGTGCAAGAACAGATACCCCATCCAAAGAACTTAAAAGTACTACAGCCTCAACGTTCAAGCCAGTGATCCTCAAGGTAGGAAGTATATTGAAAGTGCGATGcccttctgttttttctccatTCGAGTTCTGGTGCCAGCTGCAGAACAAATCCTGTGACCTGAATGATTTGCTGAAAAAGCTTCAAGATTATTATGAAACACATAAAGATCCATTCCAGCCAAATGACGGGGCCTGTGTTGTCAAGTTCTCAAAAGATGGCAAGTGGTACAGAGGAAGCATTTGCAGAAAAGTTGGTAGTGTAgtcagtgtttttcttgttgaCTTTGGCTTTACAGTGACAGAGAGGGTGCAAAATGTTCAAGCGATACAACCAGAATTCCTTGACCTTGAGGCACAAGCATTTAAGTGTAGTctttacaatttaattgaacCTACTGGTGAGTGGACAAATGAGACAAACAGACTGCTGACAGACTTTATGCGAGATGATTTCCCAGAGCTCAAGTGCATTGTATATGCGGTACTGTATGTAGAGGGTAAAGGATTGTACAATGTTGTAGATTTGCAGACACCATTTGTCAGTGCTTCACAGTTGCTAATAGAGAGAGGTCATGCCAGAAAATGTGGAAACACAAAGCCACTCATTTCATCTTATCGTCCATATTCTTATGTTCATTCTTTGTTTAACATGAAAATTGGAGGTGAAGAGCTTGTCTATGTCACACATGTGTGCAGTCCGTGGGAGTTCTATTTTCAGTTGGACAGAAACACTGAAGTTCTTGAAAGTCTGATGGAAAAAATCACAAGaacaaaaagtgaaatgcaagGCCATGTCTGGGATGTTGGCCAAGCAAAGCTTTGCTTGGCAAAATATGTTGATGGCATGTGGTACAGGGGGTTGTCTTTTGCAGTTCAATCACATTTGCATCTCAATATCTTTTTTGTAGATTTTGGAAACATGCATGTTGTTGACAAAAGCAATGTTCTACCCATTCCTGCAGAGGCTActgatttacagtttttgcCTATGCAGGCTGTGCGGTGCAGTCTTGCAGACATCCCAAAAGGAGAAATACTTGCAGAAGTAATCACATGGCTGAAGCAACATATAGTGAATAAACCTCTGAAAGCTGTAATTACATCCAGAGATGATGAAGGTGCAGTTATTTGTGACCTGTATGATGGAGATCTACAAATAAATCAGAAAGTTAAAGAACTGATTGCTTCACATGGACCTAAGGCTAAACTTGCTCTTGATGAAAAGCCTGTTGCACAGGATGGAGAATCAAGTCTGGGAATCAAAGAACCAAATATGAAAAGTGAAGCAAAAATGATCAGTCGTGTGAAACCTGCTGGCCGCAGTccaaacaaaactgattttaagAGTGAGAAGTCCTTAAATAAGGATACAGAACTTGTAGATGACTCCAAGATCGCGAAACCTAAAGAGATGTCTGTCCATGAGTTGAGAGGAGAAGAAAGGGAGGGATCATTGAGGAAAACTAACAAACCTGCAAAAGCACACAATCATCGGAGTAGGAGACATAGACCTTCAGGTTTGAGAGAACACAAGAAGTTGTTGCCAAAACTTTCTGATCTCCCTCAAAGTAAAATAAGGCCTGGCTTCAGTGTTACAGGATTTGTTTCACATATAAACACTGCTTTCAACTTCTACATACAGTTTGAGGAGGATGAGCAACCTATTCTAAAAATGGCAGAGGAACTAAATGAAGTTAAGTTGAAAGAAAACCGGAATAATTTAATCCATGAAGGGGTTAATACAGATGACCTTGTTGCAGTGAAATATGAAGAAGATGGTTCTTTCTATCGTGCAGTTGTAAAGAAATGCACTAGCAGTGATCTGCTCGTGGAGTTCATTGATTATGGCAATGTAGCAACAGTAGAAAAGACAAGTATGCGCAGACTCTCCAAAACAGGTGTTTCCCAGCCCAGGCTAAGTGTTCCCTGTTTTCTAGAAGAGCCTCACACCTTTTGCGATGATGACCATTTCAGAGAGGAAGTAACTGACAAACGACTTTCAGTTCAATTTGTTAAACAGGTTGGATCACAGTGGGCAGTACTAATGGAGGTTATTGATGAAGCCCAAGCAGGTGTTTCATCCAGTGTAATCCATAGCTGTAGTGTGGACGGTACTGAAGGGGAAGTCTCTACAGATGCTCAGAGACTTGAATGTCAGTCTCAGGATGAAAAAGATGTGACAAATCATAACACTAATACAGAAACCCATGACTCCAAACCAGGTTACAAAAATCTGCAGGATTGCAAAAGTAATCAAACTGAATGGGTGCCGCAGAATGTAAAAGTTCAAGTGCAAGATCTTAAGCCTGGGCAGATGGAGAAAGGAACGGTCTTATCTATTTCATGCAATGGAGATCTCTACATCAGTCTGCTCAAAAACTCAGAACAGCTTAATGTTCTTGGTCTTACCATTGTAGAAAATGCATACAATGCATCTTCTCTGCCAGTTATGGACCTAAAGGAAGGACTTGAATGCCTGGCACAGTCTAAGAAACATAACAAGTGGTACAGAGCAGATGTCCAAAATGTGTGTATTGACAAGGACgaagtttgtgttttcttttttgatcACGGTACCACAGAAATTATTTCTGTCCACAGCATTAAAGAGCTCACTTATGATCTTCAGTCTTTTCCCAGGCAAGCTGTTTCATGCAAGTGGACTGGCCTTGAAACTTTTTCCAGCACTACCTGTGAATCTTTCAGGGAAGCTATGAAGCCTTTAATGGATCAGGAAATTAaacttgtgtttgtttcacctTCTGAAATTGCTCCATTTTGGATGGTGGATATTACGATTGATGGGGTTTCTCTTATCCAGAAGCTCAACAAAGCAGCTTTTGTTGACAAAGTTATGGTGGAAAGATCATTTCCCCAACTTGACACTGCTTTCAAAGATGATTACTCAGTGAATGATCTCAGTCTTGTTCAGAGAATCTTCTTGCTTCCCATCGCGATGGATAGACCATACTGCAGCTTTGTTGCAGCTGTCACTGATCCTGGTGAATTCTACATTATGCTAGAAGATTTGTTTCTTGTCATGAATGATGTTTCTACAATACTTGAGAGCCTTCCAGAAGATTTGGCTGCATTGCCAAAAGCACTGTTAACTCCTGGCTCATGTTGCTTAGTCATGTCTGAAACAAAGAAGAAATGGTGCAGAGGAGAGATTATTGATGTTGACAGTGAATCAGTTTTGATCATACTAGTTGATTATGGCCATTATGAATATGTACCTTTGACACACATGAGCCATCTGAAAAGTCTTCCAGAACAGCTTACAATACTACCAAAACTTACCTATCCCTGTGTGCTTAGGGGAGTTAAGCCAGCCAAAGGAGAACAGTGGACAGATGAAGCTGCTATATTTTTCCAAGAATGCATCTCTCAGAGAAATCTGTTGATCTATTTTAGACAGTATGTGTTTGATTCCTTTTGGGAAGTGGACATTTTGGCAAATGATGTGAACATTGCTAAGGATTTAGTGGATTCCGGACATGCTGTTTATGTCGACTGTATGCTTGGACTCGGGTTACAGCAAGAGAAAAGTCTCGTCTCTTTTCTGGATACTTCGCTCAGTGCAGCTGGAATAGTACCTGAGAATgccatgaagaaaacaaacatgagtCAAGGCACTAATAGCAGCCGATTTCCTAAACTAGTGGACCACAGTATGACTGATGTGTGCAGATGTAGACAGTTTGTAAAAGAATAAAGGGTGTAGACTCTTGAAAAACAAGAAGTACAAGAAGATTTGTATGCACCTGAAAGTGTAATCCTGCTACTTATGTTTCAGCTGTTCTACCTTTGCATAAGAATTTTGTAGTGTAGATTAAATGTCCTGCGCACATTCGCTATTTATAACACAATCAgtgttttagaaataaaaaggaCCACGGATGACCCAAACTTTACACCCAAGATctcaaaatcacaaaatgtcTTTATTGGCATTAAAATGACGTTTCATGTTTGCTTTGTTGCATTTTGGAGttacatatttaaagaataaaaaatgtggaAGTAGTGGCTGCTGTGGAGACGGACTTTGAAAACAAGTCTTTGAACACTGTGTGACAATAACTGACTCATTTAAGAATATCATAGTTAGAAAGAATATTATTAGGAGCCCTTTAACAAGAATTGATTGCCATCAATTTCAACTATGGGGCATCTATCAAACTAccacattttgtacatttatatttgtacttatttgttaattcacaatttaaaatgtattttgtgtagttATTAGGACTTAATATGGGTGTGctacatttttctttgaaaaaatactttttttgtttgtccttCTGTGTATAGCTCACCATGTGATAGAGGTAGACTTGATTACTTGTTTTCATTAGCTTAatagtgttgtgcaatatagtTTTCAagatttccattttgttttcattaattgaagaagaaaaaacaaatgtgctagcaatttttttttctgcaaattgGAAAGCTGTTAAATGCAAATAAGTATTCTAAAGTACTGctagtgctgttttttttt

Function

GO: NA

KEGG:

id description
K18405 TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004121 True 6948 mRNA 0.40 4 34119571 34130023

Neighbor

gene id symbol gene type direction distance location
AMCG00004115 NA coding upstream 206686 33905291 ~ 33912885 (+)
AMCG00004113 rhob,LOC105888539,LOC103025336,LOC105907285,LOC106607565 coding upstream 351935 33767046 ~ 33767636 (+)
AMCG00004110 NA coding upstream 358114 33747909 ~ 33761457 (+)
AMCG00004109 NA coding upstream 553708 33561024 ~ 33565863 (+)
AMCG00004108 5nt1a,LOC105899417,LOC102795473 coding upstream 666899 33435750 ~ 33452672 (+)
AMCG00004122 NA coding downstream 1103 34131126 ~ 34133612 (+)
AMCG00004125 NA coding downstream 501198 34631221 ~ 34638669 (+)
AMCG00004124 klhl29,LOC107738561,LOC107678777 coding downstream 536369 34666392 ~ 34685790 (+)
AMCG00004126 klhl29,LOC107742703 coding downstream 565380 34695403 ~ 34724610 (+)
AMCG00004127 NA coding downstream 668366 34798389 ~ 34808422 (+)
G5788 NA non-coding upstream 29449 34081826 ~ 34090122 (+)
G5787 NA non-coding upstream 38786 34078351 ~ 34080785 (+)
G5768 NA non-coding upstream 226428 33892474 ~ 33893143 (+)
G5750 NA non-coding upstream 347723 33769589 ~ 33771848 (+)
G5731 NA non-coding upstream 350757 33685727 ~ 33768814 (+)
G5804 NA non-coding downstream 162248 34292271 ~ 34292501 (+)
G5808 NA non-coding downstream 251845 34381868 ~ 34382099 (+)
G5867 NA non-coding downstream 764079 34894102 ~ 34895661 (+)
G5875 NA non-coding downstream 769613 34899636 ~ 35350027 (+)
G5914 NA non-coding downstream 1171080 35301103 ~ 35306949 (+)
G5642 NA other upstream 988385 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 1717188 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 3224744 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 3812396 30296867 ~ 30307175 (+)
G5245 NA other upstream 3848047 30271210 ~ 30271524 (+)
AMCG00004138 fkbp1b other downstream 722840 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 1622427 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 1897256 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 2131765 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 2557607 36687630 ~ 36697885 (+)

Expression


Co-expression Network