AMCG00004198


Basic Information

Item Value
gene id AMCG00004198
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37529762 ~ 37545788 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004198
gttgcagaatcccaccgatcccattggtgcagcagCGCAgcactgcggacatctgcgcaacacgaaCGCGTCCATTGGTGCAAAGGTGCAGATCTGTCCACACCTGCGGAAATGTGCACTACAAGAATGCGACCATGATGCCTACCGTCCATAATAGTATCACACCGAGTGCATCTCAGGGTGTTTAAAGTGCACGTACATTGTTTTGCTACGAAGAGGTTACGAGTTTCAAGGGGGCTTGCCAATTGTGTAGCGGGGAAATGGGGAACAGCTGGAGTAACTCCCTGCAAATCCCACGTGGAAAAGGCCCAAATGAAGTAGGGTGCACAGACCTCATGATGGATCACACAGTTCAGGGAACCTTTTTTCGTCTGTACTACCCTTGTGAAACATCAGCAGGTTATGAAAATCCACCGTGGATTCCCAAAAAAGAATACTTATATGGGCTTGCTGACTTTCTGAAAAAGAACAGAAGTCTAATTGAAAAGGTTTTTAATTACTTCTATGGATCATTTACTGTTCCTGTTGCATGGAATGCACCATTTAAGCCTTCAGGCAAATATCCAGTGATTATTTTCTCTCATGGACTGGGAGCTTTCAGGTCTCTTTACTCAGGTATTTGCACAGAAATTGCATCCCAGGGTTTTATTGTGGCTGCTGTGGAACACAGagATGGATCCTCTTCAGCTACATATTATTACAAAGACAAATCATCTACAGAAAACTCCTCCTCTTCAGTTAGTAACCTTGAAGAGACGTGGCTGTATTACAGAGCTCTGCAACCTACTGAACCGGAATTCCAACTCCGGAACAAACAGGTGCAACAGAGAGCTAATGAATGCATTAAGGCTTTGAATCTTCTCACAGATATAAATACAGGAAGCTCAGTGAACAATGTGCTGCGGCTGCCATTTGATTGGTCTAAGTTAAAGGGCTCCATGGACTTGTGTAAGACTGCAGTGATGGGGCATTCCTTCGGGGGGGCTACAGTTATCGAATCTCTAAGCAAGGAGCCTAAATTCAAATGTGGTATTGCTCTGGATGCGTGGATGTTTCCATTGAATGATGACGTGTATCCAAGAGTGAACCAACCCATACTGTTCATCAACTCTGAGAAGTTTCAATGGGCTGGAAATATCATTAGGATGAAGAAGCTTGATTCCACAACCATCCAGAGGAAAATGATAACCATCAGGGGATCTGTGCACCAGAGCTTTCCAGATTTCACCTTTCTTACAGGGCCATGGATTGGAAAGATCTTAAAGCTGAAGGGAGAAATCAATCCCCAGATAGCTCTGGATCTCTCTAACAAAGCAACTCTAGCATTCCTGCAGAAACACTTAAAACTTGAAAATGACTTCAATCAATGGGACCCTCTAATTGATGGTGAGGACGATCATCTTATTCCAGGCACAAATATAAATTTGCTTCAGTCAAATGACTCTGCATAGAGGGAGACTGAATAGGAGCAGTGCTGCCTTTCAAGTACAAAACCAGCACAAGGAAAAGGACCATATTTTCAACCAGTGACACTAGAGTGGGACTTCCATTCAGCACATACCTCAAGAACTTATTCTGTGACAGTGTCTAATGCTGTGAACTACTCCTAGTTGAAGTATCCTTTATATCAGTCATAGTTTTCCTTACACATGAAGTAGCTACATTCAAGCTAGTagtcaaaataaactaattttagAGACAGTCAAACCAATTCATGGAAATCAGAATCCTAGTTACATATTCTGTTTTCCAACTGTACAAATAAAGGGCATTGATGGTGCattgcaaacaaataaactaaggAAAAGTAGAGGCCAAGTCTAAATAAAGTGTGATTAGGTAGCCTTCAATGAACGTACTGCTTTAAATTGGTGTTAAGTCAGTGTCTTTAAGAACCCTCAGTATTTTAAAGGGTGTATGTTCAGTGCTTCCATTCCACACATCAGATGTTGGTCTGTACTGAACCATGTTTGTGTATCATAAACACCTGTTCCCAGACAACGGTTAACTAAACCAGGTTGCATGTGGAGATTAACAATAACTAAATACCAGTATAACTGCTTAttggtttttaaaaaaatatatattttgtactagTCTTCAAAGCTATAACAAAGTTTGTTATTCTCCAGCAGTAGTGTACATGTACAGGGTCATGCTAGAAACATACTTATGGAGACAATCATGATggaataaggattttaaaagtattccgcttttttttttttgtacaggaCAATGTGATGGGAGAAGCTTATCAGTGTTACATaagatgtaaaatatgtattactggtGTAACACTAATCTATTTCCAACTGCAGGCACTCAGTGGATTTTCAGTGTAGTTCCCAGATAAAGACTTCACACTATATTATCTGCTGCACAGTTTTCTCCTGCTTGTAAAATAACACCTACTGTACTATGCTTTATAAACATGCCCCCAGGTGAAGTTTAGAGGTTCTGTATGTGCAGTTCCATGCTATTGACAAAGTGCCACTACACATTTGCCATTTTCAGAACCAAATGTACATAACAGCTTGTGAAATCTTCAGTTAACACTACAGTGTATTCATATGCAGTACACATTTAGAGATTTTCAATGGTAAAAGGTATTGCATATGTTTCTACTactttttaagtttaatattaTGCCTCATTTTGAGGAGAAAAAACCAAGAAATTCATAAACCTGATGTCAGAAACAATTCTATGTAAGGcaactgtattgttttaaatctaaaataaaacatgaaaaccttGAAAAGATGGGATGACTCATTAAATTGTATACTAAAGTAACTGCACGTGTACAAATACTGCTGTACACAGAgaaaagtgtaataaaatactTATGGC

Function

GO:

id name namespace
GO:0016042 lipid catabolic process biological_process
GO:0003847 1-alkyl-2-acetylglycerophosphocholine esterase activity molecular_function

KEGG:

id description
K01062 PLA2G7, PAFAH; platelet-activating factor acetylhydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004198 True 2856 mRNA 0.40 11 37529762 37545788

Neighbor

gene id symbol gene type direction distance location
AMCG00004205 NA coding upstream 44130 37478830 ~ 37485632 (+)
AMCG00004206 NA coding upstream 51075 37476289 ~ 37478687 (+)
AMCG00004199 NA coding upstream 84475 37427449 ~ 37445287 (+)
AMCG00004197 LOC107698324,LOC104954172 coding upstream 111815 37394102 ~ 37417947 (+)
AMCG00004193 LOC104951820 coding upstream 298554 37198923 ~ 37231208 (+)
AMCG00004209 SF3B6,sf3b6,pm14 coding downstream 21545 37567333 ~ 37570266 (+)
AMCG00004208 NA coding downstream 25015 37570803 ~ 37607222 (+)
AMCG00004215 LOC106593169,LOC107726627,LOC107690899 coding downstream 543075 38088863 ~ 38186137 (+)
AMCG00004216 NA coding downstream 667594 38213382 ~ 38220095 (+)
AMCG00004214 NA coding downstream 679768 38225556 ~ 38226811 (+)
G6471 NA non-coding upstream 13264 37514882 ~ 37516498 (+)
G6428 NA non-coding upstream 185317 37344061 ~ 37344445 (+)
G6427 NA non-coding upstream 188748 37337526 ~ 37341014 (+)
G6421 NA non-coding upstream 211616 37315645 ~ 37318146 (+)
G6405 NA non-coding upstream 264258 37158176 ~ 37265504 (+)
G6573 NA non-coding downstream 709441 38255229 ~ 38255483 (+)
G6585 NA non-coding downstream 870810 38416598 ~ 38418776 (+)
G6586 NA non-coding downstream 920608 38466396 ~ 38466643 (+)
G6598 NA non-coding downstream 1070456 38616244 ~ 38616464 (+)
G6617 NA non-coding downstream 1204126 38749914 ~ 38756252 (+)
G6369 NA other upstream 529604 36999357 ~ 37000158 (+)
G6328 NA other upstream 638016 36861547 ~ 36891746 (+)
G6314 NA other upstream 755239 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 831877 36687630 ~ 36697885 (+)
AMCG00004167 NA other upstream 1251528 36261788 ~ 36278234 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other downstream 286835 37832623 ~ 37847720 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 2780622 40326410 ~ 40341235 (+)
G7094 NA other downstream 3913788 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 4664642 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 5142991 42688779 ~ 42691109 (+)

Expression


Co-expression Network