AMCG00004199


Basic Information

Item Value
gene id AMCG00004199
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37427449 ~ 37445287 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004199
ATGGAGACAGGAATGGCAATATTCAAGATTCTGTTCTCTTCCACTATACTGCTCTTAATAAGTGAATTATCCAGGACAGAGACACTGATTCCGGACCACTACTCCTTGCCGGTTAATGATGCAGAAGAAAATGGTGTCAGTAAACCTCCAGCTCATTTCAGAAAAAAGCGTGCAGcagcAGCAAGTAAGGTAGACTACATTATCGATATTGAGGTGGATGCGACAAATATTATAATAGATCAACTGAGGAGTGTCCTGaattTTCTAGGAGTCTTGAATATCATATTAGACAAAACAGCAGTGAACACCTGGTCTAATCTCAACAGTGGAAATGACACAAAAAACCAAAGCTCTAATATGCTGCTTTCAGTTGAACGTTTCATCCAGTCTTTCTCTGCAAATGAAAGTGTCAATATCACAACAGATAACATCGAATTACAAAGCACAATAGTTCCTTATGGCAATTACAATTCAGCCTTTCAAAACTTGAATACTTCGGGTCAGATAAATATTCCAGGTTCAGAACTTGAAGCCAATACCACAGTCAACAGCATTGCCTTTAAGACTCTTTCAGACATCTTACCGACAAGgactgcaaacaacacaaatgacaCAAAAATCAGTATCAATGGAATAGTAATGTCAGTAAATGTGAAAAGCATGATAACCGATGTTTCACTGGGCTTCGGTTTAAAGAATACATCATTGGTAAATCCTATATGTGTCTTCTGGAATTTCTCTTTGTATGACACGGAAGGAGGATGGGATTCTTCTGGGTGTCAGTTTCAGTCCAAAGGAAATGGCAGTGTCACTTGTGTCTGCAATCACCTGACCTCTTTTTCGATTTTGATGTCCCCCAGCATTCCGGAGGCCTATCGCTTGCTTTTGGATTTCATTACCTACATAGGAGTGGGGATATCAATGTTGAGCTTAATCCTGTGCCTAATAATTGAAGCCTTTGTCTGGACCATTGTGACTAAAAACAGCATATCGTACATGCGGCACGTGTCAATTGTTAACATTGCCGTGTCTCTGTTGATAGCTGACACCTGGTTCCTAATAGGTTCAGCCATAGCCGGGACAACAAAGGAAACGCCGGTGCCTGCCTGCTCCGCAGCAacctttttcattcattttttctacCTGGCTCTGTTCTTCTGGATGTTGACTTCAGCTCTGTTGCTTTTCTACCGAACAATCATGATTTTCTCTCACTTGTCCAAGGCAGCCATGCTGGCTATAGGCTTCAGTCTGGGCTACGGCTGCCCTCTCATCATAGCTGTTGTCACAGTGGCTGCTACAGTCCCTCAGTCTCACTACATCATGGAGAAAGCATGTTGGCTGAACTGGAATGACACAAAGGCGCTTCTGGCCTTTGTTATCCCGGCCTTAACCATAGTTGCCATCAACTTACTTATTCTGATCGTGGTCATTTTCAAAATGCTCAGAAGAGGTGTGGGAGAGACCAATCAATCTGACGAGAAAAATGCCCTGATTGTGATAGTGAGGTGCATTGCAATTCTTACACCCTTTTTCGGTCTTACCTGGGGATTTGGAATTGGACTGGTGGTGAATCCAGAAAGTATAGGACTCCACGTTGTGTTTGCAGTCCTCAACTCATTACAGggaTTCTTTATCTTAGTGTTTGGAACCCTGTTAGACAGTAAAagtACAAGTGCTGatgttttcaaTGTTGCCGACCTCACATCCACAAGCCAGTCTGCTACAGATTCTCTTGTCAATAcatagttttattaaatgtattgacaaTGTATGGTGAAGAGTTGAACAATCTAGTGTTATGCAGACACCGATATCAATGTGCTTCAATATCAAATGTTTATTACCATGCAGCTGATGTGCATTGACATGGGTGCCGCACAGAAACCTGTTTTTGAGGGATGTTGTTTGGAATCTGTTTGGAATCTGCTTGGAATTTCCTCACTGGCCAAACCTACACAAAACGatactaaatgtattttttgctaaTTGTGATGGATGATCTGAATGCCtcgtttatgtatttattatttgttttataaataacttgtatacaattgtatttaaatgtttgatctTTACTGTTCCAAAAATTTAGGGAATagcatttttcaaaacagaatAGAATCTGAGATTTCACTTTGTAATGAAATTAGCACAGATGTTGCATTCACATTATAGTGCTTCTCCAGGATGTTAACTTCCCAGTCCCCGTGATATGATGACGGTAACATTTGCATgtttagagattttttttaagacgAGACATTACTTGTGAGTGCACTCAGATATTTTTGACTTAGGGAAATGTGACACCTAAATAAAGCACATCCAATGACATCCCAATGGCTACACAATGTAATGCCTCACAGTGGATCAGTGATTCTAGTTCAAAGGTGGCAGAAATATCAATGATTTATTCTGTATCTGATTTctagacacacaacacacagtaaGGAATTTGGCTGAAGTAAATGATTGAAAAAGGGGAATCTTGTCTTAACAAATGGATAAAGTACAACACTATGTTGCACAACAAGTGCTGTGAAAATCAGAATAACAAGAACCTTTATGAACTATTGTTCTCGTTATGTGTTATGTAAAGATATTTGTCTAAAGAaatcatgtaattaaataaatatatttcttattaaactttccttttttattttttgagaaaaaatatatattaaaataataactatgtttattaaatttaaa

Function

GO: NA

KEGG:

id description
K08458 ADGRF5, GPR116; adhesion G-protein coupled receptor F5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004199 True 2721 mRNA 0.38 8 37427449 37445287

Neighbor

gene id symbol gene type direction distance location
AMCG00004197 LOC107698324,LOC104954172 coding upstream 9502 37394102 ~ 37417947 (+)
AMCG00004193 LOC104951820 coding upstream 196241 37198923 ~ 37231208 (+)
AMCG00004190 NA coding upstream 487902 36936904 ~ 36939547 (+)
AMCG00004191 NA coding upstream 508459 36912646 ~ 36918990 (+)
AMCG00004192 NA coding upstream 523355 36884358 ~ 36904094 (+)
AMCG00004206 NA coding downstream 31002 37476289 ~ 37478687 (+)
AMCG00004205 NA coding downstream 33543 37478830 ~ 37485632 (+)
AMCG00004198 NA coding downstream 84475 37529762 ~ 37545788 (+)
AMCG00004209 SF3B6,sf3b6,pm14 coding downstream 122046 37567333 ~ 37570266 (+)
AMCG00004208 NA coding downstream 125516 37570803 ~ 37607222 (+)
G6428 NA non-coding upstream 83004 37344061 ~ 37344445 (+)
G6427 NA non-coding upstream 86435 37337526 ~ 37341014 (+)
G6421 NA non-coding upstream 109303 37315645 ~ 37318146 (+)
G6405 NA non-coding upstream 161945 37158176 ~ 37265504 (+)
G6383 NA non-coding upstream 399203 37028039 ~ 37028246 (+)
G6471 NA non-coding downstream 69595 37514882 ~ 37516498 (+)
G6573 NA non-coding downstream 809942 38255229 ~ 38255483 (+)
G6585 NA non-coding downstream 971311 38416598 ~ 38418776 (+)
G6586 NA non-coding downstream 1021109 38466396 ~ 38466643 (+)
G6598 NA non-coding downstream 1170957 38616244 ~ 38616464 (+)
G6369 NA other upstream 427291 36999357 ~ 37000158 (+)
G6328 NA other upstream 535703 36861547 ~ 36891746 (+)
G6314 NA other upstream 652926 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 729564 36687630 ~ 36697885 (+)
AMCG00004167 NA other upstream 1149215 36261788 ~ 36278234 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other downstream 387336 37832623 ~ 37847720 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 2881123 40326410 ~ 40341235 (+)
G7094 NA other downstream 4014289 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 4765143 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 5243492 42688779 ~ 42691109 (+)

Expression


Co-expression Network