AMCG00004209 (SF3B6,sf3b6,pm14)


Basic Information

Item Value
gene id AMCG00004209
gene name SF3B6,sf3b6,pm14
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37567333 ~ 37570266 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004209
TCATCAGCCTGCGGCCAACAAGAATCATACTTCCTTAAGATAGCCATTTTGCATCGCTGTTTGTGTGCGTCCTGTGTTGTTTTCGTTCTTAAAGATATTTCTTTCAACAAGAAGGCGCAATCATGGCTATGCAAGCTGCAAAAAGAGCTAACATTCGTTTACCACCAGAAGTAAATCGAATCCTGTATATTAGGAATCTGCCCTACAAAATTACTGCAGAAGAAATGTATGATATCTTTGGAAAGTATGGACCAATCCGGCAAATCAGAGTAGGGAACACTCCAGAAACCAGAGGAACCGCTTATGTTGTCTATGAAGACATCTTTGATGCCAAGAATGCTTGTGATCACTTATCTGGATTTAATGTCTGCAACAGATATCTGGTTGTCTTGTACTACAATGCAAACAGAGCTTTCCAGAAAATGGATACAAAGAAGAAAGAGGAACAGCTGAAACTTCTCAAAGAAAAATATGGCATCAACACAGatccaccaaaataaacaaCCCATGGACTGATTCAAACTTTGAAGaactcttttgttttattttttccctcattgcATATGGAATTGTTTTCCCTGTATCATAAATATGACAAAAGGCCACAatagcctttttattttatttttacaaggtCTCATGTATAATTGTATGATTTGTGATAAAGTAATGGATTTATTATGTCCACTTTACAATATGTCTTGTTGTCTGTtaagattgaaaaaaaataaaacatatgttcCTTTTGCAGCTTTTATAATCTTTTCAAATGTCCAGTTTTCACTGAAAAACAGCACTGCTGTGGACTTTAAGCAGTGTATCCTTGTTAATAaatactgatttgtttttagtttttgttttttgtcttgttttcacagtggtgtttttgaaataatctgcttgtttttccatttccatcttAATGAAAGGTTATTTGCAGATTATTTGATCTCTTACCAATGTGCATCTGTTCTGCTTTGAGGTCTGCCCACCAATATGGTGTAACAAACCAAATGAATGAATCGCAGTATTTGGTCTGAAAGTAACTTGCTTGCTTGTAAATGCACATGTCTCATTCTTAAACTGTGACAGTGTGAACTGGTACATGCACTTACAAGGTCAGCATGCATTCAATAATGTAATGAAGGACACAATTTTTCTTGGTTTAATATGCATCTTGCTTTCTCATTATTTATCTATGTGTATGTCTAGGGAGGCAACATTTTGTCTGATCCTTAGAGATGATATTAAACAAAAGTacacaattacattaatatgGTATAGCATTGATTTTTAACTGATCAATGTGAATCCACTGTTTGG

Function

symbol description
sf3b6 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2 snRNP and spliceosomal complex. Orthologous to human SF3B6 (splicing factor 3b subunit 6).

NR:

description
splicing factor 3B subunit 6

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006739 NADP metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005654 nucleoplasm cellular_component
GO:0005689 U12-type spliceosomal complex cellular_component
GO:0003960 NADPH molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0070402 NADPH binding molecular_function
GO:0048038 quinone binding molecular_function

KEGG:

id description
K12833 SF3B14; pre-mRNA branch site protein p14

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004209 True 1323 mRNA 0.35 4 37567333 37570266

Neighbor

gene id symbol gene type direction distance location
AMCG00004198 NA coding upstream 21545 37529762 ~ 37545788 (+)
AMCG00004205 NA coding upstream 81701 37478830 ~ 37485632 (+)
AMCG00004206 NA coding upstream 88646 37476289 ~ 37478687 (+)
AMCG00004199 NA coding upstream 122046 37427449 ~ 37445287 (+)
AMCG00004197 LOC107698324,LOC104954172 coding upstream 149386 37394102 ~ 37417947 (+)
AMCG00004208 NA coding downstream 537 37570803 ~ 37607222 (+)
AMCG00004215 LOC106593169,LOC107726627,LOC107690899 coding downstream 518597 38088863 ~ 38186137 (+)
AMCG00004216 NA coding downstream 643116 38213382 ~ 38220095 (+)
AMCG00004214 NA coding downstream 655290 38225556 ~ 38226811 (+)
AMCG00004218 NA coding downstream 1161242 38731508 ~ 38743566 (+)
G6471 NA non-coding upstream 50835 37514882 ~ 37516498 (+)
G6428 NA non-coding upstream 222888 37344061 ~ 37344445 (+)
G6427 NA non-coding upstream 226319 37337526 ~ 37341014 (+)
G6421 NA non-coding upstream 249187 37315645 ~ 37318146 (+)
G6405 NA non-coding upstream 301829 37158176 ~ 37265504 (+)
G6573 NA non-coding downstream 684963 38255229 ~ 38255483 (+)
G6585 NA non-coding downstream 846332 38416598 ~ 38418776 (+)
G6586 NA non-coding downstream 896130 38466396 ~ 38466643 (+)
G6598 NA non-coding downstream 1045978 38616244 ~ 38616464 (+)
G6617 NA non-coding downstream 1179648 38749914 ~ 38756252 (+)
G6369 NA other upstream 567175 36999357 ~ 37000158 (+)
G6328 NA other upstream 675587 36861547 ~ 36891746 (+)
G6314 NA other upstream 792810 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 869448 36687630 ~ 36697885 (+)
AMCG00004167 NA other upstream 1289099 36261788 ~ 36278234 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other downstream 262357 37832623 ~ 37847720 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 2756144 40326410 ~ 40341235 (+)
G7094 NA other downstream 3889310 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 4640164 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 5118513 42688779 ~ 42691109 (+)

Expression


Co-expression Network